View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4983-Insertion-1 (Length: 224)

Name: NF4983-Insertion-1
Description: NF4983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4983-Insertion-1
NF4983-Insertion-1
[»] chr2 (9 HSPs)
chr2 (39-224)||(32799917-32800102)
chr2 (39-224)||(32308964-32309149)
chr2 (39-224)||(32565686-32565879)
chr2 (71-224)||(32815308-32815469)
chr2 (39-224)||(32806871-32807063)
chr2 (145-224)||(28215870-28215949)
chr2 (40-145)||(32305256-32305351)
chr2 (158-190)||(28216008-28216040)
chr2 (152-185)||(28220194-28220227)
[»] chr6 (1 HSPs)
chr6 (87-222)||(301166-301301)
[»] chr5 (3 HSPs)
chr5 (8-56)||(37704411-37704459)
chr5 (8-56)||(37437477-37437525)
chr5 (8-56)||(37698593-37698641)
[»] chr4 (1 HSPs)
chr4 (22-56)||(16841203-16841237)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 39 - 224
Target Start/End: Complemental strand, 32800102 - 32799917
Alignment:
Q  39 tttcctatataaaaagagtatcaatcaatatgctaactaaccattcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctt 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32800102 tttcctatataaaaagagtatcaatcaatatgctaactaaccattcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctt 32800003  T
Q  139 tctcttcatcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32800002 tctcttcatcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctg 32799917  T

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Target: chr2; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 32308964 - 32309149
Alignment:
Q  39 tttcctatataaaaagagtatcaatcaatatgctaactaaccattcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctt 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32308964 tttcctatataaaaagagtatcaatcaatatgctaactaaccattcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctt 32309063  T
Q  139 tctcttcatcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32309064 tctcttcatcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctg 32309149  T

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Target: chr2; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 39 - 224
Target Start/End: Complemental strand, 32565879 - 32565686
Alignment:
Q  39 tttcctatataaaaagagtatcaatcaatatgctaactaaccattcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctt 138  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32565879 tttcctatataaaaaaagtatcaatcaatatgctaacaaaccattcagattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctt 32565780  T
Q  139 tctc--------ttcatcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctg 224  Q
    | ||        ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32565779 tttcttctcttgttcttcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctg 32565686  T

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Target: chr2; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 32815469 - 32815308
Alignment:
Q  71 ctaactaaccattcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttctcttca--------tcttcatcatcaagaa 162  Q
    ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||         ||||||||||||||||    
T  32815469 ctaaccaaccattcagattcagttacaattccaaccaacccaataacttcctaaacaagtcttctctttttcttctcttgttcttcttcatcatcaagaa 32815370  T
Q  163 aatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctg 224  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32815369 aatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctg 32815308  T

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Target: chr2; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 224
Target Start/End: Complemental strand, 32807063 - 32806871
Alignment:
Q  39 tttcctatataaaaagagtatcaatcaatatgctaactaaccattcatattcagttaca----attccaaccaactcaataacttcctaaacaagtcttc 134  Q
    |||||||||||||||||||||||||    ||||||||||||||  |  |||||||| ||    |||||||||||||||||||||||||||||||||||||    
T  32807063 tttcctatataaaaagagtatcaat----atgctaactaaccaaacc-attcagttgcatgcaattccaaccaactcaataacttcctaaacaagtcttc 32806969  T
Q  135 tctttctcttca--------tcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctg 224  Q
    ||||| |||||         ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32806968 tctttttcttctcttgttcttcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctg 32806871  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 28215949 - 28215870
Alignment:
Q  145 catcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctg 224  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||    
T  28215949 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctg 28215870  T

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Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 32305256 - 32305351
Alignment:
Q  40 ttcctatataaaaagagtatcaatcaatatgctaactaaccattcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctcttt 139  Q
    ||||||||||||||||||| ||||    |||||||||||||||||      ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  32305256 ttcctatataaaaagagtagcaat----atgctaactaaccattc------agttacaattccaacaaacccaataacttcctaaacaagtcttctcttt 32305345  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 28216040 - 28216008
Alignment:
Q  158 aagaaaatgaggagattcttcatcttcaaccca 190  Q
    |||||||||||||||||||||||||||||||||    
T  28216040 aagaaaatgaggagattcttcatcttcaaccca 28216008  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 28220194 - 28220227
Alignment:
Q  152 atcatcaagaaaatgaggagattcttcatcttca 185  Q
    ||||||||||||||||||||| ||||||||||||    
T  28220194 atcatcaagaaaatgaggagaatcttcatcttca 28220227  T

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Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 301166 - 301301
Alignment:
Q  87 attcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttctcttcatcttcatcatcaagaaaatgaggagattcttcatcttcaa 186  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  301166 attcagttacaattccaacaaacccaataacttcctaaacaagtcttctctttctcttcttcttcatcatcaagaaaatgagaagattcttcatcttcaa 301265  T
Q  187 cccatggttcatagttgcattcattgtattccttcc 222  Q
    |||||||||||||||||||||||||||| |||||||    
T  301266 cccatggttcatagttgcattcattgtagtccttcc 301301  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 37704459 - 37704411
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaaaagag 56  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37704459 tttggtccttgccccttagtttcaggttatgtttcctatataaatagag 37704411  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 37437525 - 37437477
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaaaagag 56  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  37437525 tttggtccttgccccttagtttcaagttatgtttcctatataaatagag 37437477  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 37698641 - 37698593
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaaaagag 56  Q
    |||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  37698641 tttggtcctttccccgtagtttcaggttatgtttcctatataaatagag 37698593  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 16841203 - 16841237
Alignment:
Q  22 cttagtttcaggttatgtttcctatataaaaagag 56  Q
    |||||||||||||||||||||||||||||| ||||    
T  16841203 cttagtttcaggttatgtttcctatataaatagag 16841237  T

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