View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4984-Insertion-1 (Length: 906)
Name: NF4984-Insertion-1
Description: NF4984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4984-Insertion-1 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 775; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 775; E-Value: 0
Query Start/End: Original strand, 8 - 906
Target Start/End: Original strand, 43221743 - 43222634
Alignment:
| Q |
8 |
atcagcacataggagagttgggaatgtgtcaaacccctcggacaagcatagagtcaatataagtttcattcctttttgacaatcatcagattcagacaga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43221743 |
atcagcacataggagagttgggaatgtgtcaaacccctcggacaagcatagagtcaatataagtttcattcctttttgacaatcatcagattcagacaga |
43221842 |
T |
|
| Q |
108 |
gttaaatcccctgtagattttgtgtaagcacgaagcaaaatgatccaccaaaatccagagtcaacaggagcaactcttccaattgcactttcaccaaaat |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43221843 |
gttaaatcccctgtagattttgtgtaagcacgaagcaaaatgatccaccaaaatccagagtcaacaggagcaactcttccaattgcactttcaccaaaat |
43221942 |
T |
|
| Q |
208 |
ctgcaataagagtatctgttttcctaacagcatcatgaaggactttgaaactagctggcataacaccttcaccaagcttaaattgatctactcttttttc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43221943 |
ctgcaataagagtatctgttttcctaacagcatcatgaaggactttgaaactagctggcataacaccttcaccaagcttaaattgatctactcttttttc |
43222042 |
T |
|
| Q |
308 |
ccacccttgaagacgcagcgtcttcagtaagaagttcttaactatttctggttcaccattcatcaaaaaggctagtgcacttggaacaaaatcgcgaacn |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222043 |
ccacccttgaagacgcagcgtcttcagtaagaagttcttaactatttccggttcaccattcatcaaaaaggctagtgcacttggaacaaaatcgcgaaca |
43222142 |
T |
|
| Q |
408 |
nnnnnnnnnnnnnnnnnnntttatcatcaaatgtcatactcatacttagatatgtgcagaaacaattattcagtgcgtggaagccatcacagacaatttt |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222143 |
aaaacctaaaaagcaaaaatttatcatcaaatgtcatactcatacttagatatgtgcagaaacaattattcagtgcgtggaagccatcacagacaatttt |
43222242 |
T |
|
| Q |
508 |
agtactgattaaggaattcgctcacctgatcataatttagaacttcttctgattgatgatcaacagctgcaagtgtgcctacaggtttgccattgaaata |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222243 |
agtactgattaaggaattcgctcacctgatcataatttagaacttcttctgattgatgatcaacagctgcaagtgtgcctacaggtttgccattgaaata |
43222342 |
T |
|
| Q |
608 |
gactagagacttcctgagagattcccaggcatcagcaagcattggctgaggctcgaacgagttctgagcagatgaaagtgatcttgctccaatgggacag |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
43222343 |
gactagagacttcctgagagattcccaggcatcagcaagcattggctgaggctcgaacgagttctgagcagatgaaaatgatcttgctccaat-ggacag |
43222441 |
T |
|
| Q |
708 |
ttcactgagtaaactgtcatcaactgatctctgtctctctatgtttagccttgggattgtcaagcaagccagagagatcaaaagcatccatctcgggaga |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43222442 |
ttcactgagtaaactgtcatcaactgatctctgtctctctatgtttagcctt-ggattgtcaagcaagccagagagatcaaaagcatccatctc-ggaga |
43222539 |
T |
|
| Q |
808 |
gcaaacactgagacctgattttcctaattccccacagggcccgttcattccagagatcgaacactgagactttgattttcctcatttcccacaagcccg |
906 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
43222540 |
gcaaacactgagacctgattttcctaatt-cccaca-ggcccgttcattccagagatcgaacactgagac-ttgattttcctca-ttcccacaagcccg |
43222634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 406
Target Start/End: Original strand, 43231161 - 43231559
Alignment:
| Q |
8 |
atcagcacataggagagttgggaatgtgtcaaacccctcggacaagcatagagtcaatataagtttcattcctttttgacaatcatcagattcagacaga |
107 |
Q |
| |
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||||||||| || |||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
43231161 |
atcagcacaaagcagagttggaaatgtgtcaaacccctctgacaagcataaagtcaatataagcttcattcctttttgacaactatcagattcagacaga |
43231260 |
T |
|
| Q |
108 |
gttaaatcccctgtagattttgtgtaagcacgaagcaaaatgatccaccaaaatccagagtcaacaggagcaactcttccaattgcactttcaccaaaat |
207 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
43231261 |
gttaagtcccctgtagattttgtgtaagcacgaagcaaaatgatccaccagaatccagagtcaacaggagcaactcttccgattgcactttcgccaaaat |
43231360 |
T |
|
| Q |
208 |
ctgcaataagagtatctgttttcctaacagcatcatgaaggactttgaaactagctggcataacaccttcaccaagcttaaattgatctactcttttttc |
307 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||| || |
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| T |
43231361 |
ctgcaataagagtatctgttttcctaacggcatcatgcaggactttgaaactagctggcatcacaccttccccaagtttaaacctatctactcttttctc |
43231460 |
T |
|
| Q |
308 |
ccacccttgaagacgcagcgtcttcagtaagaagttcttaactatttctggttcaccattcatcaaaaaggctagtgcacttggaacaaaatcgcgaac |
406 |
Q |
| |
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|||||| |||||| | || ||||| | |||||||| || |||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
43231461 |
ccacccctgaagatgtagtgtctttaacaagaagttttttactatttccggttcaccattcatcaaaaaggctagagcacttgggacaaaatctcgaac |
43231559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 502 - 683
Target Start/End: Original strand, 43232654 - 43232831
Alignment:
| Q |
502 |
aattttagtactgattaaggaattcgctcacctgatcataatttagaacttcttctgattgatgatcaacagctgcaagtgtgcctacaggtttgccatt |
601 |
Q |
| |
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||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| |||||||||||||||||||| |||||| |||||| || | |
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| T |
43232654 |
aattttagtactgattaagaaattc----acctgatcgtaatttagaacttcctctgcttgatgatcaacagctgcaattgtgccaacaggtgcacctct |
43232749 |
T |
|
| Q |
602 |
gaaatagactagagacttcctgagagattcccaggcatcagcaagcattggctgaggctcgaacgagttctgagcagatgaa |
683 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||||||||||| |||||| || ||||| |||||||| ||||||||||| |
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| T |
43232750 |
gaaatggactagagatttcctgagagattcccaggcatcagcaaccattggatgcggctcaaacgagttgcgagcagatgaa |
43232831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 724 - 801
Target Start/End: Original strand, 43232931 - 43233007
Alignment:
| Q |
724 |
tcatcaactgatctctgtctctctatgtttagccttgggattgtcaagcaagccagagagatcaaaagcatccatctc |
801 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | || |||||||||| | || |||||| ||| |||||||||| |
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| T |
43232931 |
tcatcaaatgatctctgtctctctatgtttagcc-tcggcctgtcaagcaaacgagtgagatcgaaatcatccatctc |
43233007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 55112520 - 55112614
Alignment:
| Q |
117 |
cctgtagattttgtgtaagcacgaagcaaaatgatccaccaaaatccagagtcaacaggagcaactcttccaattgcactttcaccaaaatctgc |
211 |
Q |
| |
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| T |
55112520 |
cctgtagattttgtgtatgcacgaagcaatatgatccaccaaaatccagaatcaacaggagcaaccctgcctattgcactttcaccaaaatctgc |
55112614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 195 - 400
Target Start/End: Original strand, 7788433 - 7788638
Alignment:
| Q |
195 |
ctttcaccaaaatctgcaataagagtatctgttttcctaacagcatcatgaaggactttgaaactagctggcataacaccttcaccaagcttaaattgat |
294 |
Q |
| |
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||||| ||||||||| |||||||||| ||| |||||||| |||| |||||||||| ||||| |||| |||| ||| |||| ||||||||||| || |
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| T |
7788433 |
ctttcgccaaaatcttcaataagagtgtctattttcctagtgtcatcgtgaaggacttcgaaacaagcttgcatcacatcttccacaagcttaaataaat |
7788532 |
T |
|
| Q |
295 |
ctactcttttttcccacccttgaagacgcagcgtcttcagtaagaagtt-cttaactatttctggttcaccattcatcaaaaaggctagtgcacttggaa |
393 |
Q |
| |
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||||||||||| ||||||| |||||| | || ||||||| || ||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| | |
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| T |
7788533 |
ctactcttttt-cccacccatgaagatgtagtgtcttcaagaataagtttcttgactattttcggttcaccattcatcaaaaaggctagggcacttggga |
7788631 |
T |
|
| Q |
394 |
caaaatc |
400 |
Q |
| |
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| ||||| |
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| T |
7788632 |
ctaaatc |
7788638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 28863339 - 28863251
Alignment:
| Q |
117 |
cctgtagattttgtgtaagcacgaagcaaaatgatccaccaaaatccagagtcaacaggagcaactcttccaattgcactttcaccaaa |
205 |
Q |
| |
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|||||||| ||||||||||||||||| || || ||||||||||||||||| |||||||||||||| || || ||||||||| ||||||| |
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| T |
28863339 |
cctgtagactttgtgtaagcacgaagtaatataatccaccaaaatccagaatcaacaggagcaaccctgcctattgcacttccaccaaa |
28863251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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