View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4984-Insertion-2 (Length: 236)

Name: NF4984-Insertion-2
Description: NF4984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4984-Insertion-2
NF4984-Insertion-2
[»] chr8 (2 HSPs)
chr8 (85-236)||(27513624-27513775)
chr8 (126-236)||(8675134-8675245)
[»] chr1 (2 HSPs)
chr1 (53-226)||(39210040-39210197)
chr1 (85-217)||(24036791-24036927)
[»] chr3 (1 HSPs)
chr3 (114-223)||(9461180-9461298)
[»] chr2 (1 HSPs)
chr2 (95-207)||(38950770-38950885)
[»] chr6 (2 HSPs)
chr6 (159-211)||(18331979-18332031)
chr6 (90-157)||(18331878-18331945)
[»] chr4 (2 HSPs)
chr4 (8-52)||(47952681-47952725)
chr4 (8-52)||(26594680-26594724)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 85 - 236
Target Start/End: Original strand, 27513624 - 27513775
Alignment:
Q  85 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 184  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  185 gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcacc 236  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcacc 27513775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 8675245 - 8675134
Alignment:
Q  126 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g 224  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  225 gtcttcggcacc 236  Q
    ||||||||||||    
T  8675145 gtcttcggcacc 8675134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 53 - 226
Target Start/End: Complemental strand, 39210197 - 39210040
Alignment:
Q  53 ttcttgtatacatcaaatggagcctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatca 152  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  39210197 ttcttgtatacatcaaatggaacctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttc---------- 39210108  T
Q  153 aaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 226  Q
          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210107 ------aaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 39210040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
Q  85 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 183  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  184 ----ggcttgcagatagtttcatcaacttcccttgtat 217  Q
        |||||||||||||||||||||||||  |||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtat 24036927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 9461298 - 9461180
Alignment:
Q  114 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 204  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  205 acttcccttgtattttcaa 223  Q
    |||||| |  |||||||||    
T  9461198 acttccttcttattttcaa 9461180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  95 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 188  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  189 gcagatagtttcatcaact 207  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  159 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 211  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  90 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 157  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 47952681 - 47952725
Alignment:
Q  8 tagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 52  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  47952681 tagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 47952725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 26594680 - 26594724
Alignment:
Q  8 tagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 52  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  26594680 tagagtggtatgttgccacataagtgtgtccatgtatcatctctc 26594724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University