View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4984_high_4 (Length: 236)
Name: NF4984_high_4
Description: NF4984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4984_high_4 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 43561423 - 43561643
Alignment:
| Q |
16 |
catacatgtggcgttcaagattggaggagaagttgaaagccattgattgaaattgaaatttgtgggtgttgcagcaggcacggaaaaggagatatatgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561423 |
catacatgtggcgttcaagattggaggagaagttgaaagccattgattgaaattgaaatttgtgggtgttgcagcaggcacggaaaaggagatatatgtt |
43561522 |
T |
|
| Q |
116 |
caaggtatggtggatacaaaaagagatatgtttaggtttatagagagtgtaatattgcacctatttatatatgcttatgttannnnnnnattgtaataaa |
215 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43561523 |
caaggtacggtggatacaaagagagatatgtttaggtttatagagagtgtaatattgcacctatttatatatgcttatgttatttttttattgtaataaa |
43561622 |
T |
|
| Q |
216 |
ataattattatggtccttgac |
236 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43561623 |
ataattattatggtccttgac |
43561643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 17729737 - 17729679
Alignment:
| Q |
16 |
catacatgtggcgttcaagattggaggagaagttgaaagccattgattgaaattgaaat |
74 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17729737 |
catacatgtgacgttcaagattggaggagaagttgaaagccattgattgaaattgaaat |
17729679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 1622554 - 1622646
Alignment:
| Q |
24 |
tggcgttcaagattggaggagaagttgaaagccattga-ttgaaattgaaatttgtgggtgttgcagcaggcacggaaaaggagatatatgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||| || |||| ||||| |||||||||||| |
|
|
| T |
1622554 |
tggcgttcaagattggaggagaagttgaaagccattgatttgaaaatgaaatccaagggtgttgtggctggcagggaaagagagatatatgtt |
1622646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 1602100 - 1602139
Alignment:
| Q |
24 |
tggcgttcaagattggaggagaagttgaaagccattgatt |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1602100 |
tggcgttcaagattggaggagaagttgaaagccattgatt |
1602139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 29543326 - 29543279
Alignment:
| Q |
16 |
catacatgtggcgttcaagattggaggagaagttgaaagccattgatt |
63 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
29543326 |
catacatctggcattcaagtttggaggagaagttgaaagccattgatt |
29543279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 29543217 - 29543173
Alignment:
| Q |
141 |
atatgtttaggtttatagagagtgtaatattgcacctatttatat |
185 |
Q |
| |
|
||||| |||||||||| |||||||||||| || |||||||||||| |
|
|
| T |
29543217 |
atatgattaggtttatggagagtgtaatactgaacctatttatat |
29543173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University