View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4984_low_1 (Length: 317)
Name: NF4984_low_1
Description: NF4984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4984_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 7084883 - 7085122
Alignment:
| Q |
1 |
gaaaaagaaaggtgaaggtataaaaaatttatcaaggatgaagaggttaccaggtgttgataatgaattgcagaagaaattggatgcaaaaatggatgaa |
100 |
Q |
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| T |
7084883 |
gaaaaagaaaggtgaaggtataaaaaatttatcaaggatgaagaggttaccaggtgttgataatgaattgcagaagaaattggatgcaaaaatggatgaa |
7084982 |
T |
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| Q |
101 |
gttcctgctagaagacaagctcgtgaggcttttaaggatattcagcttggtattgaccatatattatttaaggtatttatgtctttgc-------ttttg |
193 |
Q |
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| T |
7084983 |
gttcctgctagaagacaagctcgtgaggcttttaaggatattcagcttggtattgaccatatattatttaaggtatttgtgtctttgctttttgtttttg |
7085082 |
T |
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| Q |
194 |
ttgatggaataatgaaattgatgaaataaatgaaacccta |
233 |
Q |
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| T |
7085083 |
ttgatggaataatgaaattgatgaaataaatcaaacccta |
7085122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 8807537 - 8807298
Alignment:
| Q |
1 |
gaaaaagaaaggtgaaggtataaaaaatttatcaaggatgaagaggttaccaggtgttgataatgaattgcagaagaaattggatgcaaaaatggatgaa |
100 |
Q |
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| T |
8807537 |
gaaaaagaaaggtgaaggtataaaaattttatcaaggatgaagaggttaccaggtgttgattatgaattgcagaagaaattggatgcaaaaatggatgaa |
8807438 |
T |
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| Q |
101 |
gttcctgctagaagacaagctcgtgaggcttttaaggatattcagcttggtattgaccatatattatttaaggtatttatgtctttgct-------tttg |
193 |
Q |
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| T |
8807437 |
gttcctgctagaagacaagctcgtgaggcttttaaggatattcagcttggtattgaccatatattatttaaggtatttatgtctttgcttttggtttttg |
8807338 |
T |
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| Q |
194 |
ttgatggaataatgaaattgatgaaataaatgaaacccta |
233 |
Q |
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| T |
8807337 |
ttgatggaataatgaaattgatgaaataaatgaaacccta |
8807298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 1400756 - 1400887
Alignment:
| Q |
44 |
aggttaccaggtgttgataatgaattgcagaagaaattggatgcaaaaatggatgaagttcctgctagaagacaagctcgtgaggcttttaaggatattc |
143 |
Q |
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| T |
1400756 |
aggtttccaggagttgacaatgaattgcaaaagattttggatgctaatatggatcatgtttctgctagaagacaagctcgtgaagcctttaaggatgttc |
1400855 |
T |
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| Q |
144 |
agcttggtattgaccatatattatttaaggta |
175 |
Q |
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| T |
1400856 |
agcttggaattgatcacatactctttaaggta |
1400887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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