View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4984_low_3 (Length: 287)
Name: NF4984_low_3
Description: NF4984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4984_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 174 - 282
Target Start/End: Complemental strand, 26610164 - 26610056
Alignment:
| Q |
174 |
ggattggaaccgcaagagcaattttaccaaattattatgttgtttatgttttacattttgtgtcacattgaaaccacttatttggtttggtatacttagg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26610164 |
ggattggaaccgcaagagcaattttaccaaattattatattgtttatgttttagactttgtgtcacattgaaaccacttatttggttttgtatacttagg |
26610065 |
T |
|
| Q |
274 |
tctcttgtt |
282 |
Q |
| |
|
||||||||| |
|
|
| T |
26610064 |
tctcttgtt |
26610056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 47817611 - 47817534
Alignment:
| Q |
1 |
aaaggattggaagcttagtcgtgggagaataagacaaaaaggaaataatcaagtgtagttggtttatagtataatcta |
78 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
47817611 |
aaaggattggaagcttagccgtgggagaataagacaaaaaggaaataatcaagtgtggttggtttatagtatgatcta |
47817534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 23669111 - 23669184
Alignment:
| Q |
5 |
gattggaagcttagtcgtgggagaataagacaaaaaggaaataatcaagtgtagttggtttatagtataatcta |
78 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23669111 |
gattggaagcttattcgtgggagaataagacaaaaaggaaataatcaagtgtggttggtttatagtataatcta |
23669184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9369962 - 9370035
Alignment:
| Q |
1 |
aaaggattggaagcttagtcgtgggagaataagacaaaaaggaaataatcaagtgtagttggtttatagtataa |
74 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||| |||| ||||| |
|
|
| T |
9369962 |
aaaggattggaagcttagccgtgggagaataagacaaaaaggtaataatcaaatgtgattggtatataatataa |
9370035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University