View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4984_low_6 (Length: 236)
Name: NF4984_low_6
Description: NF4984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4984_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 43561423 - 43561643
Alignment:
| Q |
16 |
catacatgtggcgttcaagattggaggagaagttgaaagccattgattgaaattgaaatttgtgggtgttgcagcaggcacggaaaaggagatatatgtt |
115 |
Q |
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| T |
43561423 |
catacatgtggcgttcaagattggaggagaagttgaaagccattgattgaaattgaaatttgtgggtgttgcagcaggcacggaaaaggagatatatgtt |
43561522 |
T |
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| Q |
116 |
caaggtatggtggatacaaaaagagatatgtttaggtttatagagagtgtaatattgcacctatttatatatgcttatgttannnnnnnattgtaataaa |
215 |
Q |
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| T |
43561523 |
caaggtacggtggatacaaagagagatatgtttaggtttatagagagtgtaatattgcacctatttatatatgcttatgttatttttttattgtaataaa |
43561622 |
T |
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| Q |
216 |
ataattattatggtccttgac |
236 |
Q |
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| T |
43561623 |
ataattattatggtccttgac |
43561643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 17729737 - 17729679
Alignment:
| Q |
16 |
catacatgtggcgttcaagattggaggagaagttgaaagccattgattgaaattgaaat |
74 |
Q |
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| T |
17729737 |
catacatgtgacgttcaagattggaggagaagttgaaagccattgattgaaattgaaat |
17729679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 1622554 - 1622646
Alignment:
| Q |
24 |
tggcgttcaagattggaggagaagttgaaagccattga-ttgaaattgaaatttgtgggtgttgcagcaggcacggaaaaggagatatatgtt |
115 |
Q |
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| T |
1622554 |
tggcgttcaagattggaggagaagttgaaagccattgatttgaaaatgaaatccaagggtgttgtggctggcagggaaagagagatatatgtt |
1622646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 1602100 - 1602139
Alignment:
| Q |
24 |
tggcgttcaagattggaggagaagttgaaagccattgatt |
63 |
Q |
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| T |
1602100 |
tggcgttcaagattggaggagaagttgaaagccattgatt |
1602139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 29543326 - 29543279
Alignment:
| Q |
16 |
catacatgtggcgttcaagattggaggagaagttgaaagccattgatt |
63 |
Q |
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| T |
29543326 |
catacatctggcattcaagtttggaggagaagttgaaagccattgatt |
29543279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 29543217 - 29543173
Alignment:
| Q |
141 |
atatgtttaggtttatagagagtgtaatattgcacctatttatat |
185 |
Q |
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| T |
29543217 |
atatgattaggtttatggagagtgtaatactgaacctatttatat |
29543173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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