View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4985_high_11 (Length: 236)
Name: NF4985_high_11
Description: NF4985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4985_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 43901427 - 43901204
Alignment:
| Q |
13 |
acattttgtgttgaagtgttacgtgacttaagaaaacgtgcaagttcttcccaatgttgttggttttgttttcctttggagnnnnnnncaatatcaaaat |
112 |
Q |
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| T |
43901427 |
acattttgtgttgaagtgttacgtgacttaagaaaacgtgcaagttcttcccaatgttgttggttttgttttcctttggagtttttttcaatatcaaaat |
43901328 |
T |
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| Q |
113 |
caataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttccacaagtaatcagaaacattttttgcatcatcagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43901327 |
caataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttccacaagtaatcagaaacattttttgcatcatcagt |
43901228 |
T |
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| Q |
213 |
ggaacctaaaccatattctccatc |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
43901227 |
ggaacctaaaccatattctccatc |
43901204 |
T |
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