View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4985_high_4 (Length: 324)
Name: NF4985_high_4
Description: NF4985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4985_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 11626532 - 11626680
Alignment:
| Q |
1 |
ctgtttgacacgtcagcattgagctttgattcatggccacaagtttttgtggcttgtaatagattttctttttcaaacgtggtttttcagattctctagt |
100 |
Q |
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| T |
11626532 |
ctgtttgacacgtcagcattgagctttgattcttggccacaagtttttgtggcttgtaatagattttctttttcaaacgtggtttttcagattctctagt |
11626631 |
T |
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| Q |
101 |
tac-atataactttttgtgtaccctacttgtggcaa-tgacacgtcaac |
147 |
Q |
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| T |
11626632 |
tacaatataactttttgtgtaccctacttgtggcaattgacacgtcaac |
11626680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 11626711 - 11626839
Alignment:
| Q |
177 |
gtgtttagtggaattttgggtaacgtggtggaagttgattggtcatgttgtgaatgacagcgttcaaggagacaatgttg------------ttaccata |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11626711 |
gtgtttagtggaattttgggtaacgtggtggaagttgattggtcatgttgtgaatgacagcgttcaaggagacaatgttgtttcgattttttttaccata |
11626810 |
T |
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| Q |
265 |
aaagataggaaaagaaggggtagaaatag |
293 |
Q |
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| T |
11626811 |
aaagataggaaaaggaggggtagaaatag |
11626839 |
T |
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