View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4985_high_6 (Length: 268)
Name: NF4985_high_6
Description: NF4985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4985_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 8248048 - 8248165
Alignment:
| Q |
14 |
aaatccaaaacatcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaacagtcaacaactcaggatcaccag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8248048 |
aaatccaaaacatcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaacagtcaacaactcaggatcaccag |
8248147 |
T |
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| Q |
114 |
gtcctgttccaaccaaaa |
131 |
Q |
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|||||||||||||||||| |
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| T |
8248148 |
gtcctgttccaaccaaaa |
8248165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 8248229 - 8248291
Alignment:
| Q |
195 |
ataccttaacaagctttttcagctctggaagctgtaaagctatatcatcctctcttattgaac |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8248229 |
ataccttaacaagctttttcagctctggaagctgtaaagctatatcatcctctcttattgaac |
8248291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 12836218 - 12836335
Alignment:
| Q |
14 |
aaatccaaaacatcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaacagtcaacaactcaggatcaccag |
113 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
12836218 |
aaatccaaaacatcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaagagtcaacaattcaggatcaccag |
12836317 |
T |
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| Q |
114 |
gtcctgttccaaccaaaa |
131 |
Q |
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|||||||||||||||||| |
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| T |
12836318 |
gtcctgttccaaccaaaa |
12836335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 12836399 - 12836460
Alignment:
| Q |
195 |
ataccttaacaagctttttcagctctggaagctgtaaagctatatcatcctctcttattgaa |
256 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
12836399 |
atacctgaacaagttttttcagctctggaagctgtaaagctatgtcatgttctcttattgaa |
12836460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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