View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4985_low_10 (Length: 249)
Name: NF4985_low_10
Description: NF4985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4985_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 8248523 - 8248298
Alignment:
| Q |
18 |
ttcttcacaaaccaaac--aacccacatggctcttgttcacaaaatcccatctttcattccaaatcaccattttctcatcaatcaacgccacccc-attt |
114 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||| || ||||||| |||| |
|
|
| T |
8248523 |
ttcttcacaaaccaaaacaaacccacatggctcttcttcacaaaatcccatctttcactccaattcaccattttccaatcaacaaaaaccacccccattt |
8248424 |
T |
|
| Q |
115 |
cctcaatcaactgcacaacttcatcaacctcacctttcactgagaaacactctttacaaagataccaaagagaccaatgggtatatcagaaaacaacctc |
214 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8248423 |
cctcaatctcctgcacaacctcatcaacctcacctttcactgagaaacactctttacaaagataccaaagagaccaatgggtttatcagaaaacaacctc |
8248324 |
T |
|
| Q |
215 |
atgtaaccacatcccttttgatgatt |
240 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
8248323 |
atgtaaccacatcccttgtgatgatt |
8248298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 12836609 - 12836485
Alignment:
| Q |
99 |
caacgccaccccatttcctcaatcaactgcacaacttcatcaacctc---acctttcactgagaaacactctttacaaagataccaaagagaccaatggg |
195 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || || || ||||| ||| ||||| || ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
12836609 |
caacgcaaccccatttcctcaatcaactgcaccacatcctccacctcttcacccttcacagaaaaatactccacacaaagataccaaagagaccaatggg |
12836510 |
T |
|
| Q |
196 |
tatatcagaaaacaacctcatgtaa |
220 |
Q |
| |
|
| || ||||| || ||||| ||||| |
|
|
| T |
12836509 |
tttaccagaataccacctcctgtaa |
12836485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University