View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4985_low_3 (Length: 339)
Name: NF4985_low_3
Description: NF4985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4985_low_3 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 24099566 - 24099896
Alignment:
| Q |
1 |
cacataaattaaaccacgaaccaacacggaaaaaacccaaaaccaaacacgagtgagcatcgacatagatggatccaaatataaaatcaccacataattc |
100 |
Q |
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| T |
24099566 |
cacataaattaaaccacgaaccaacacggagaaaacccacaaccaaacacgagtgagcatcgacatagatggatccaaatataaaatcaccacataattc |
24099665 |
T |
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| Q |
101 |
atttgataactaaaataaagcgagacactagtcagaaacgagatgacccataataagatgnnnnnnnctaactaaagacacatttgcggatcaaaatgat |
200 |
Q |
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| T |
24099666 |
atttgataactaaaataaagcgagacactagtcagaaacgagatggcccataataagatgaaaaaaactaactaaagacacatttgcggatcaaaatgat |
24099765 |
T |
|
| Q |
201 |
taacaacaaacacatttaagtatgttgttgtgaatttgatacattcaaggactaatatgagagaatttcacgctttgcagccctgagacttatgatggca |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24099766 |
taacaacaaacacatttaagtatgtttttgtgaatttgatacattcaaggaccaatatgagagaatttcacgctttgcagtcctgagacttatgatggca |
24099865 |
T |
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| Q |
301 |
tgtgtgtctagtgtccgaaacatctcagtga |
331 |
Q |
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| T |
24099866 |
tgtgtgtctattgtccgaaacatctcagtga |
24099896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 10175 - 10093
Alignment:
| Q |
168 |
ctaactaaagacacatttgcggatcaaaatgattaacaacaaacacatttaagtatgttgttgtgaatttgatacattcaagg |
250 |
Q |
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| T |
10175 |
ctaactaaagacacatttgaggaccaaaatgactaacaaaggacacatttaggtatggttttgtaattttcatatattcaagg |
10093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 32621900 - 32621814
Alignment:
| Q |
168 |
ctaactaaagacacatttgcggatcaaaatgattaacaacaaacacatttaagtatgttgttgtgaatttgatacattcaaggacta |
254 |
Q |
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||||| ||||| ||||||| | |||||||||||||||| | ||| ||||| ||||||| |||| | || |||||||||||||||| |
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| T |
32621900 |
ctaacaaaagatacatttgagaatcaaaatgattaacataagacatatttaggtatgtttttgtaatcttcatacattcaaggacta |
32621814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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