View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4985_low_7 (Length: 280)
Name: NF4985_low_7
Description: NF4985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4985_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 13472792 - 13472531
Alignment:
| Q |
19 |
atgatgcatcgtctgtttcatttcttatgaatattgaatttagactatcctcgcatagcagttagggactgtgttataggttttaccgttcaagtatgca |
118 |
Q |
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| T |
13472792 |
atgatgcatcgtctgtttcatttcttatgaatattgaatttagactatcctcgcatagcagttagggactgtgttataggttttaccgttcaagtatgca |
13472693 |
T |
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| Q |
119 |
ctattttaaatcaaggcttaatnnnnnnngtttgttgtaagaaacgatttgtaaaataagttgcaaagaatagaaagattgtgctgagattagacgtcgg |
218 |
Q |
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| T |
13472692 |
ctattttaaatcaaggcttaataaaaaaagtttgttgtaagaaacgatttgtaaaataagttgcaatgaatagaaagattgtgctgagattagacgtcgg |
13472593 |
T |
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| Q |
219 |
ctatttattcaacgcatcctcttagattgattgtatattttctaagatttaaatatgtctcc |
280 |
Q |
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| T |
13472592 |
ctatttattcaacgcatcctcttagattgattgtatattttctaagatttaaatatgtctcc |
13472531 |
T |
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