View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4986-Insertion-2 (Length: 357)

Name: NF4986-Insertion-2
Description: NF4986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4986-Insertion-2
NF4986-Insertion-2
[»] chr2 (4 HSPs)
chr2 (8-220)||(4421646-4421866)
chr2 (272-357)||(4421916-4422001)
chr2 (120-201)||(6944899-6944980)
chr2 (8-66)||(6944775-6944830)
[»] chr6 (2 HSPs)
chr6 (121-213)||(33344224-33344316)
chr6 (121-207)||(35122576-35122662)
[»] chr7 (3 HSPs)
chr7 (134-193)||(1275855-1275914)
chr7 (122-198)||(15582411-15582487)
chr7 (137-193)||(24565575-24565631)
[»] chr4 (4 HSPs)
chr4 (121-196)||(21687984-21688058)
chr4 (8-81)||(21688107-21688177)
chr4 (137-195)||(35774550-35774608)
chr4 (108-192)||(24274780-24274864)
[»] chr3 (1 HSPs)
chr3 (137-192)||(13881034-13881089)
[»] chr1 (2 HSPs)
chr1 (120-190)||(26173783-26173853)
chr1 (129-198)||(35388583-35388652)
[»] chr5 (1 HSPs)
chr5 (120-198)||(35892087-35892165)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 4421646 - 4421866
Alignment:
Q  8 atatgcatgtatacgcttctttgttgctgaagaatatttttggtttaaagaagcatgttgctaacatttatttctatcacgtcagggcaactgttgcgta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  4421646 atatgcatgtatacgcttctttgttgctgaagaatatttttggtttaaagaagcatgttcctaacatttatttctatcatgtcagggcaactgttgcgta 4421745  T
Q  108 g--------gtcaatctcaagcgctctttaaggttaggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatgtcccaa 199  Q
    |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4421746 gattttttggtcaatctcaagcgctctttaaggttaggtgtgaccttttggcagactcctccatcgaagttggaggcagtgttgaggcttgatgtcccaa 4421845  T
Q  200 gccgaaccttgtttgcaggga 220  Q
    |||||||||||||||||||||    
T  4421846 gccgaaccttgtttgcaggga 4421866  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 4421916 - 4422001
Alignment:
Q  272 cctagcttcatatgcacgtaattaacgatccggatccgcctcannnnnnnnnngaaagaaatgattccgcctcattattctcaagg 357  Q
    |||||||||||||||| ||||||||||||||||||||||||||          ||||||||||||||||||||||| |||||||||    
T  4421916 cctagcttcatatgcatgtaattaacgatccggatccgcctcattttttttttgaaagaaatgattccgcctcattgttctcaagg 4422001  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 6944899 - 6944980
Alignment:
Q  120 gcgctctttaaggttaggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatgtcccaagc 201  Q
    |||||||||||| ||||||||||| ||||||||  |||| |||||| |||||||| || | ||||||||||||| |||||||    
T  6944899 gcgctctttaagattaggtgtgactttttggcatgctcccccatcggagttgaagtcaatcttgaggcttgatgccccaagc 6944980  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 6944775 - 6944830
Alignment:
Q  8 atatgcatgtatacgcttctttgttgctgaagaatatttttggtttaaagaagcatgtt 66  Q
    ||||||||||||| || ||||||||| |||||   |||||||| |||||||||||||||    
T  6944775 atatgcatgtatatgcctctttgttggtgaag---atttttgggttaaagaagcatgtt 6944830  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 33344316 - 33344224
Alignment:
Q  121 cgctctttaaggttaggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatgtcccaagccgaaccttgttt 213  Q
    ||||||| ||| ||| ||||||| ||||||||  |||| |||||| |||||||| |||| ||||||||||||| |||| || ||||| |||||    
T  33344316 cgctcttcaagattaagtgtgacattttggcatgctcccccatcggagttgaagtcagtcttgaggcttgatgccccaggctgaaccctgttt 33344224  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 35122576 - 35122662
Alignment:
Q  121 cgctctttaaggttaggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatgtcccaagccgaacc 207  Q
    ||||||| ||| ||| ||||||| ||||||||  ||||||||||  |||||||| |||| ||||||||||||| |||| || |||||    
T  35122576 cgctcttcaagattaagtgtgacattttggcatgctcctccatcagagttgaagtcagtcttgaggcttgatgccccaggctgaacc 35122662  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 1275855 - 1275914
Alignment:
Q  134 taggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatg 193  Q
    |||||||||| ||||||||  |||| |||| |||||||||| ||||||||||||||||||    
T  1275855 taggtgtgactttttggcaagctcccccattgaagttgaagtcagtgttgaggcttgatg 1275914  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 15582411 - 15582487
Alignment:
Q  122 gctctttaaggttaggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatgtccca 198  Q
    |||||| ||| ||||||||||| ||||||||   ||| |||||| |||||||| |||| ||||||||||||| ||||    
T  15582411 gctcttcaagattaggtgtgactttttggcatgttcccccatcggagttgaagtcagtcttgaggcttgatgcccca 15582487  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 24565631 - 24565575
Alignment:
Q  137 gtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatg 193  Q
    ||||||| ||||| ||||||||||||||  | ||||||||||||||||| |||||||    
T  24565631 gtgtgactttttgacagactcctccatcataattgaaggcagtgttgagacttgatg 24565575  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 21688058 - 21687984
Alignment:
Q  121 cgctctttaaggttaggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatgtcc 196  Q
    ||||||| ||||||||||||||||||||| |||||| | || ||||| |||||| || ||||||||| ||||||||    
T  21688058 cgctcttcaaggttaggtgtgaccttttgacagacttccccgtcgaaattgaagtca-tgttgaggcatgatgtcc 21687984  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 21688177 - 21688107
Alignment:
Q  8 atatgcatgtatacgcttctttgttgctgaagaatatttttggtttaaagaagcatgttgctaacatttatttc 81  Q
    ||||||||||||| |||||||||||| |||||   ||||||||||||||| ||||| |  ||||||||||||||    
T  21688177 atatgcatgtatatgcttctttgttggtgaag---atttttggtttaaaggagcatatccctaacatttatttc 21688107  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 35774550 - 35774608
Alignment:
Q  137 gtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatgtc 195  Q
    ||||||| ||||||||||||||||| ||||||||| || | |||||||| |||||||||    
T  35774550 gtgtgacattttggcagactcctccttcgaagttggagtctgtgttgagacttgatgtc 35774608  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 24274864 - 24274780
Alignment:
Q  108 ggtcaatctcaagcgctctttaaggttaggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgat 192  Q
    |||||| |||| |||||||| ||| ||||||||||| ||||||||  |||||||||   ||||||||  ||| ||||||||||||    
T  24274864 ggtcaacctcaggcgctcttcaagattaggtgtgactttttggcatgctcctccattagagttgaagtgagtcttgaggcttgat 24274780  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 13881089 - 13881034
Alignment:
Q  137 gtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgat 192  Q
    |||||||| |||| ||||||||||||||| |||||||| | |||||||||||||||    
T  13881089 gtgtgaccatttgacagactcctccatcggagttgaagtcggtgttgaggcttgat 13881034  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 26173783 - 26173853
Alignment:
Q  120 gcgctctttaaggttaggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttg 190  Q
    |||||||| ||| ||||||||||| ||||||||| |||| |||||| |||| ||| || ||||||||||||    
T  26173783 gcgctcttcaagattaggtgtgactttttggcaggctcccccatcggagttaaagtcattgttgaggcttg 26173853  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 35388652 - 35388583
Alignment:
Q  129 aaggttaggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatgtccca 198  Q
    ||||||| ||||||| ||||| |||||| |||  ||  |||||||| |||||||||||||||||| ||||    
T  35388652 aaggttaagtgtgacattttgacagacttctcattcatagttgaagtcagtgttgaggcttgatgcccca 35388583  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 35892165 - 35892087
Alignment:
Q  120 gcgctctttaaggttaggtgtgaccttttggcagactcctccatcgaagttgaaggcagtgttgaggcttgatgtccca 198  Q
    |||||||| ||| |||| |||||| ||||||||  |||| |||||  |||||||| |||| ||||||||||||| ||||    
T  35892165 gcgctcttcaagattagatgtgactttttggcatgctcccccatcagagttgaagtcagtcttgaggcttgatgcccca 35892087  T

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