View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4986_low_1 (Length: 585)

Name: NF4986_low_1
Description: NF4986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4986_low_1
NF4986_low_1
[»] chr2 (2 HSPs)
chr2 (29-569)||(3826958-3827502)
chr2 (32-64)||(8430368-8430400)
[»] scaffold0087 (1 HSPs)
scaffold0087 (32-64)||(37818-37850)
[»] chr8 (2 HSPs)
chr8 (32-64)||(9631478-9631510)
chr8 (32-64)||(19256286-19256318)
[»] chr7 (1 HSPs)
chr7 (32-64)||(48933212-48933244)
[»] chr6 (3 HSPs)
chr6 (36-64)||(1954956-1954984)
chr6 (32-64)||(5360485-5360517)
chr6 (32-64)||(12351617-12351649)
[»] chr5 (2 HSPs)
chr5 (32-64)||(16121870-16121902)
chr5 (32-64)||(20187972-20188004)
[»] chr4 (2 HSPs)
chr4 (32-64)||(32175768-32175800)
chr4 (32-64)||(46286260-46286292)
[»] chr3 (2 HSPs)
chr3 (32-64)||(11007714-11007746)
chr3 (32-64)||(17582332-17582364)
[»] chr1 (3 HSPs)
chr1 (32-64)||(12720885-12720917)
chr1 (32-64)||(16913608-16913640)
chr1 (32-64)||(17661126-17661158)


Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 29 - 569
Target Start/End: Original strand, 3826958 - 3827502
Alignment:
Q  29 tagaattagtgacggaaaaaataaaattcgtcacaagaaattagaaatgttctctccttgaatgccactattttttaaaacgacggatgtttgtannnnn 128  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         
T  3826958 tagaattagtgacggaaaaaataaaatttgtcacaagaaattagaaatgttctctccttgaatgtcactattttttaaaacgacggatgtttgtattttt 3827057  T
Q  129 nnnnnnnnnnnaacggcaaaatttattaataaccaattcact----atgactaacagagaccgacaagacataatgttagtattttgtcactgatttaat 224  Q
               ||||||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3827058 tatttttttttaacggcaaaatttattaataaccaattcattgcacatgactaacagagaccgacaagacataatgttagtattttgtcactgatttaat 3827157  T
Q  225 ttatctgatgcaggaggcgatttcagcgccggatcagctaaaggaaggaacaaactacataaagaaattgcagatcaacctggagaaaatgaaggaaaag 324  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3827158 ttatctgatgcaggaggcgatttcagtgccggatcagctaaaggaagcaacaaactacataaagaaattgcagatcaacctggagaaaatgaaggaaaag 3827257  T
Q  325 aagaattttctactaggaattcaaaggcaaaatgtgaatttgaatagaaaccagaagatgggattaaagtctccaaaaattaagatacaacaaattggtt 424  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3827258 aagaattttctactaggaattcaaaggccaaatgtgaatttgaatagaaaccagaagatgggattaaagtctccaaaaattaagatacaacaaattggtt 3827357  T
Q  425 tagtcttagaggttgttctaataactggattggagtctcagtttttgttcagtgaaacccttcgagttcttcatgaagaaggagttgatattgttaatgc 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  3827358 tagtcttagaggttgttctaataactggattggagtctcagtttttgttcagcgaaacctttcgagttcttcatgaagaaggagttgatattgttaatgc 3827457  T
Q  525 tagttataaggtcaatgaagattctgttttccattcaatacactg 569  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3827458 tagttataaggtcaatgaagattctgttttccattcaatacactg 3827502  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 8430400 - 8430368
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  8430400 aattagtgacggaaaaaataaaattcctcacaa 8430368  T

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Target: scaffold0087 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 37818 - 37850
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  37818 aattagtgacggaaaaaataaaattcctcacaa 37850  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 9631510 - 9631478
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  9631510 aattagtgacggaaaaaataaaattcctcacaa 9631478  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 19256318 - 19256286
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  19256318 aattagtgacggaaaaaataaaattcctcacaa 19256286  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 48933244 - 48933212
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  48933244 aattagtgacggaaaaaataaaattcctcacaa 48933212  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 1954984 - 1954956
Alignment:
Q  36 agtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||||||    
T  1954984 agtgacggaaaaaataaaattcgtcacaa 1954956  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 5360517 - 5360485
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  5360517 aattagtgacggaaaaaataaaattcctcacaa 5360485  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 12351617 - 12351649
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  12351617 aattagtgacggaaaaaataaaattcctcacaa 12351649  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 16121870 - 16121902
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  16121870 aattagtgacggaaaaaataaaattcctcacaa 16121902  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 20187972 - 20188004
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  20187972 aattagtgacggaaaaaataaaattcctcacaa 20188004  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 32175768 - 32175800
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  32175768 aattagtgacggaaaaaataaaattcctcacaa 32175800  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 46286260 - 46286292
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  46286260 aattagtgacggaaaaaataaaattcctcacaa 46286292  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 11007714 - 11007746
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    ||||||||||||||||||| |||||||||||||    
T  11007714 aattagtgacggaaaaaatgaaattcgtcacaa 11007746  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 17582332 - 17582364
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  17582332 aattagtgacggaaaaaataaaattcctcacaa 17582364  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 12720917 - 12720885
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  12720917 aattagtgacggaaaaaataaaattcctcacaa 12720885  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 16913608 - 16913640
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  16913608 aattagtgacggaaaaaataaaattcctcacaa 16913640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 17661158 - 17661126
Alignment:
Q  32 aattagtgacggaaaaaataaaattcgtcacaa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  17661158 aattagtgacggaaaaaataaaattcctcacaa 17661126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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