View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4986_low_13 (Length: 240)
Name: NF4986_low_13
Description: NF4986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4986_low_13 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 23667660 - 23667439
Alignment:
| Q |
19 |
acctgtacccacgttttgacaaaatctacaattttaaacttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccaccactatacc |
118 |
Q |
| |
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||||||| |||||||||| ||||| ||||| |||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
23667660 |
acctgtatccacgttttggcaaaagctacacttttaagcttcccaaaaatcacggtaaattagcattaggaagtggtatttatgctcccaccattatacc |
23667561 |
T |
|
| Q |
119 |
aaacaggcacttaataagcaagcatgatatgaaatgctagttagaaatttaggtaatccacaagcatctcgtggcacatagtttatgcttttgtttcaat |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23667560 |
aaacaggcacttaataagcaagcatgatatgaaatgctagttagaaatttaggtaatccacaagcatctcgtggcacatagtttatgcttttgtttcaat |
23667461 |
T |
|
| Q |
219 |
atcaatatagttaactcctatt |
240 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
23667460 |
atcaatatagttaactcctatt |
23667439 |
T |
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Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 34784998 - 34785102
Alignment:
| Q |
19 |
acctgtacccacgttttgacaaaatctacaattttaaacttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccaccactatacc |
118 |
Q |
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|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34784998 |
acctgtacccacgttttgacaaaagctacaattttaagcttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccaccattatacc |
34785097 |
T |
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| Q |
119 |
aaaca |
123 |
Q |
| |
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||||| |
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|
| T |
34785098 |
aaaca |
34785102 |
T |
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Target: scaffold0002 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 408673 - 408565
Alignment:
| Q |
19 |
acctgtacccacgttttgacaaaatctacaattttaaacttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccaccactatacc |
118 |
Q |
| |
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|||| ||||||||||||| ||||| |||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
408673 |
acctatacccacgttttggcaaaagctacaattgtaagcttcccaaaaatcatggtagattagcattgggaagtggtatttatgctcccaccactatacc |
408574 |
T |
|
| Q |
119 |
aaacaggca |
127 |
Q |
| |
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||||||||| |
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| T |
408573 |
aaacaggca |
408565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 7578 - 7472
Alignment:
| Q |
22 |
tgtacccacgttttgacaaaatctacaattttaaacttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccaccactataccaaa |
121 |
Q |
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|
||||||||||||||| |||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
7578 |
tgtacccacgttttggtaaaagctacaattttaagcttctcaaaaatcacggtaaattagcattggaaagtggtatttatgctcccgccactataccaaa |
7479 |
T |
|
| Q |
122 |
caggcac |
128 |
Q |
| |
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||||||| |
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| T |
7478 |
caggcac |
7472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 21732919 - 21733030
Alignment:
| Q |
23 |
gtacccacgttttgacaaaatctacaattttaaacttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccaccactataccaaac |
122 |
Q |
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|
|||||||||||||| ||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21732919 |
gtacccacgttttggcaaaagctacaattttaagtttctcaaaaattacggtttattagcattgggaagtggtatttatactcccaccactataccaaac |
21733018 |
T |
|
| Q |
123 |
aggcacttaata |
134 |
Q |
| |
|
||||||| |||| |
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| T |
21733019 |
aggcactaaata |
21733030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 51268840 - 51268739
Alignment:
| Q |
28 |
cacgttttgacaaaatctacaattttaaacttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccaccactataccaaacaggca |
127 |
Q |
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|
||||||||| ||||| |||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
51268840 |
cacgttttggcaaaagctacaattgtaagcttctcaaaaatcacggtaggttagcattgagaagtggtatttatgctcccaccacaataccaaacaggca |
51268741 |
T |
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| Q |
128 |
ct |
129 |
Q |
| |
|
|| |
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|
| T |
51268740 |
ct |
51268739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 28024338 - 28024439
Alignment:
| Q |
28 |
cacgttttgacaaaatctacaattttaaacttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccaccactataccaaacaggca |
127 |
Q |
| |
|
||||||||| |||||| |||||||||| |||| ||||||||||| || |||||||||| | | ||||| |||||||||||| | ||||||||| || |
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| T |
28024338 |
cacgttttgcaaaaatccacaattttaagcttcataaaaatcacggcagtggagcattgggacgcgatatttgtgctcccaccaccaaaccaaacagcca |
28024437 |
T |
|
| Q |
128 |
ct |
129 |
Q |
| |
|
|| |
|
|
| T |
28024438 |
ct |
28024439 |
T |
|
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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 2094463 - 2094520
Alignment:
| Q |
39 |
aaaatctacaattttaaacttctcaaaaatcacggtagattagcattgggaagtggta |
96 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
2094463 |
aaaagctacaattttaagcttctcaaaaatcacggtagattagtattgggaagtggta |
2094520 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 48949201 - 48949254
Alignment:
| Q |
57 |
cttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccacc |
110 |
Q |
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||||| |||||||||||||| | |||||||||| ||| |||||||||| ||||| |
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|
| T |
48949201 |
cttcttaaaaatcacggtagttgagcattgggatgtgatatttatgcttccacc |
48949254 |
T |
|
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 15248040 - 15247944
Alignment:
| Q |
28 |
cacgttttgacaaaatctacaattttaaacttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccaccactataccaaacag |
124 |
Q |
| |
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||||||||| | ||| | |||||||||| |||| |||||||||||| | |||||||||| || ||||| |||||||||||| | ||||||||| |
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| T |
15248040 |
cacgttttgcctaaagccacaattttaagcttcataaaaatcacggtggtggagcattgggacctgatatttgtgctcccaccaccaaaccaaacag |
15247944 |
T |
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