View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4986_low_2 (Length: 462)

Name: NF4986_low_2
Description: NF4986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4986_low_2
NF4986_low_2
[»] chr8 (5 HSPs)
chr8 (322-445)||(40482083-40482206)
chr8 (134-274)||(40482254-40482395)
chr8 (8-45)||(40482523-40482560)
chr8 (134-196)||(3650514-3650576)
chr8 (139-185)||(24202156-24202202)
[»] chr3 (2 HSPs)
chr3 (134-198)||(33634490-33634554)
chr3 (161-199)||(28808179-28808217)
[»] scaffold0086 (1 HSPs)
scaffold0086 (157-197)||(19083-19123)
[»] chr4 (4 HSPs)
chr4 (134-197)||(50668333-50668396)
chr4 (161-198)||(19283974-19284011)
chr4 (157-197)||(37970202-37970242)
chr4 (169-197)||(44221440-44221468)
[»] chr7 (2 HSPs)
chr7 (134-191)||(25251509-25251566)
chr7 (168-204)||(24839474-24839510)
[»] chr1 (1 HSPs)
chr1 (157-197)||(37573313-37573353)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 322 - 445
Target Start/End: Complemental strand, 40482206 - 40482083
Alignment:
Q  322 ccctatctttcctaaagccaacaccaacactaagtgctaaaagtattactatacccgaactgaaataagtcaagccaaaattattgaagccaaggaaata 421  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40482206 ccctatctttcctaaagccaacaccaacactaagtgctacaagtattactatacccgaactgaaataagtcaagccaaaattattgaagccaaggaaata 40482107  T
Q  422 ttttaaatgccatgccactggtgg 445  Q
    ||||||||||||||||||||||||    
T  40482106 ttttaaatgccatgccactggtgg 40482083  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 134 - 274
Target Start/End: Complemental strand, 40482395 - 40482254
Alignment:
Q  134 tgaaccccgaaccttatatacactatatattatttataccaactgaattaagctcacgatgacaatattatgtctttgtttctcgatagaaaaatgtttt 233  Q
    ||||||||| |||||  ||||| |||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  40482395 tgaaccccggaccttgcatacattatatattatctataccaactaaattaagctcacgaggacaatgttatgtctttgtttctcgatagaaaaaagtttt 40482296  T
Q  234 tcaaac-nnnnnnnntagctagacaacggtataaaaatacgg 274  Q
    ||||||         |||||||||||||||||||||||||||    
T  40482295 tcaaacaaaaaaaaatagctagacaacggtataaaaatacgg 40482254  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 40482560 - 40482523
Alignment:
Q  8 agattatacttgatgacggttgtattagtttgagtggg 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40482560 agattatacttgatgacggttgtattagtttgagtggg 40482523  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 3650576 - 3650514
Alignment:
Q  134 tgaaccccgaaccttatatacactatatattatttataccaactgaattaagctcacgatgac 196  Q
    |||||||||||||||| ||| | |||  ||| ||| |||||||||| ||||||||||||||||    
T  3650576 tgaaccccgaaccttacatatattatgcattttttctaccaactgagttaagctcacgatgac 3650514  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 24202202 - 24202156
Alignment:
Q  139 cccgaaccttatatacactatatattatttataccaactgaattaag 185  Q
    ||||||||||||||| | ||| |||| ||||||||||||||||||||    
T  24202202 cccgaaccttatatatattatgtattgtttataccaactgaattaag 24202156  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 33634554 - 33634490
Alignment:
Q  134 tgaaccccgaaccttatatacactatatattatttataccaactgaattaagctcacgatgacaa 198  Q
    |||||||||||||||| ||| | ||||||||||||||||||||| | |||| |||||||||||||    
T  33634554 tgaaccccgaaccttacatatattatatattatttataccaactaagttaaactcacgatgacaa 33634490  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 28808179 - 28808217
Alignment:
Q  161 tattatttataccaactgaattaagctcacgatgacaat 199  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  28808179 tattatctataccaactgaattaagctcacgaggacaat 28808217  T

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Target: scaffold0086 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 19083 - 19123
Alignment:
Q  157 tatatattatttataccaactgaattaagctcacgatgaca 197  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  19083 tatatattgtttataccaactgagttaagctcacgatgaca 19123  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 50668396 - 50668333
Alignment:
Q  134 tgaaccccgaaccttatatacactatatattatttataccaactgaattaagctcacgatgaca 197  Q
    |||||||||||||||| ||| | ||| |||| || ||||||||||||||||| |||||| ||||    
T  50668396 tgaaccccgaaccttacatatattatgtattgttcataccaactgaattaagttcacgaagaca 50668333  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 19283974 - 19284011
Alignment:
Q  161 tattatttataccaactgaattaagctcacgatgacaa 198  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  19283974 tattgtttataccaactgaattaagctcacgaggacaa 19284011  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 37970202 - 37970242
Alignment:
Q  157 tatatattatttataccaactgaattaagctcacgatgaca 197  Q
    |||| ||| |||||||||||||||||||| |||||||||||    
T  37970202 tatacattttttataccaactgaattaagttcacgatgaca 37970242  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 44221468 - 44221440
Alignment:
Q  169 ataccaactgaattaagctcacgatgaca 197  Q
    |||||||||||||||||||||||||||||    
T  44221468 ataccaactgaattaagctcacgatgaca 44221440  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 25251566 - 25251509
Alignment:
Q  134 tgaaccccgaaccttatatacactatatattatttataccaactgaattaagctcacg 191  Q
    |||||||| ||||||||||| | |||  ||| |||||||||||||| |||||||||||    
T  25251566 tgaaccccaaaccttatatatattatgcattgtttataccaactgagttaagctcacg 25251509  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 24839510 - 24839474
Alignment:
Q  168 tataccaactgaattaagctcacgatgacaatattat 204  Q
    |||||||||||| |||||||||||| |||||||||||    
T  24839510 tataccaactgagttaagctcacgaggacaatattat 24839474  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 37573353 - 37573313
Alignment:
Q  157 tatatattatttataccaactgaattaagctcacgatgaca 197  Q
    |||| |||||||||||||||||| |||||||||||| ||||    
T  37573353 tatacattatttataccaactgagttaagctcacgaggaca 37573313  T

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