View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4986_low_7 (Length: 293)
Name: NF4986_low_7
Description: NF4986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4986_low_7 |
 | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
| [»] scaffold0516 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 25417712 - 25417449
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25417712 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacatatctaaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
25417613 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25417612 |
tcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagt |
25417513 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25417512 |
ttaaggagataaggaacaagatgagtgtcgcatctttggagcatctacctatctatctatctat |
25417449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 5766558 - 5766303
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5766558 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacctatctaaaaaaatattgtgacattttaccgtaaacacaatgagacaaggaa |
5766459 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5766458 |
tcacgagatcaagtaaataaaaagagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
5766359 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctat |
268 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
5766358 |
ttaaggagctgaggaacaagatgggtgtcgcatctttggagcatctatctatctat |
5766303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 39065303 - 39065044
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39065303 |
ttcttcaatctaattgttaaacttaaattaaacaatatgaaactttacctatctaaaaaaatattgtgacattttaccgtaaacacattgaaacaaggaa |
39065204 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39065203 |
tcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgttatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
39065104 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctat |
272 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39065103 |
ttaaggagctgaggaacaagatgggtgtcgcatctttggagcatctatctatctatctat |
39065044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 47232081 - 47231826
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
47232081 |
ttctccaatctaattgttaaacttaaattaaacactatgatactttacctatctaaaaaaatattgtgacattttaccgtaaacacatttagacaatgaa |
47231982 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
47231981 |
tcacgagatcaagtaaataaaaggagactaaaaccgttacattgtcctactgctatatatgaagcagacgttccaacaaaatttgtgaagcatggcaagt |
47231882 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctat |
268 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
47231881 |
ttaaggagctgaggaacaagatgggtgtcgcatatttggagcatctatctatctat |
47231826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 5433362 - 5433479
Alignment:
| Q |
159 |
ctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatct |
258 |
Q |
| |
|
||||| ||||||||||||||| | ||| | ||||| |||||||||||||||||||| ||||| ||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
5433362 |
ctactactatatatgaagcaggctttctaacaaaaattgtgaagcatgacaagtttgaggaggtgatgaacaagatggatgtcgcatctttggagcatct |
5433461 |
T |
|
| Q |
259 |
acctatctatctatctat |
276 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
5433462 |
atctatctatctatctat |
5433479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 5433185 - 5433238
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatct |
66 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| | ||||||||||| ||||| |
|
|
| T |
5433185 |
ttctccaatataattgctaaatttaaattaaacactttgaaactttacctatct |
5433238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 13431590 - 13431327
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13431590 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacatatctaaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
13431491 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13431490 |
tcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagt |
13431391 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13431390 |
ttaaggagataaggaacaagatgagtgtcgcatctttggagcatctacctatctatctatctat |
13431327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 18884443 - 18884707
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18884443 |
ttctccaatctaattgttaaacttaaattatacactatgaaactttacctatctaaaaaaatattgt--cattttaccgtaaacacattgagacaaggaa |
18884540 |
T |
|
| Q |
113 |
gcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcat |
205 |
Q |
| |
|
|| ||||||||||||| ||| || | || ||||| |||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
18884541 |
tcaatgtattagagatcaagtaaagaaagggtggctggaaccgctacattgtcctattgctatatacgaagcagacgttcctacaaaaattgtgaagcat |
18884640 |
T |
|
| Q |
206 |
gacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctat |
272 |
Q |
| |
|
||||||||| ||||| |||| ||||| ||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
18884641 |
gacaagtttgaggagttgagaaacaagatgggtgtcacatctttggagcatctatctatctatctat |
18884707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 2503139 - 2502876
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2503139 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacatatctaaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
2503040 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2503039 |
tcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagt |
2502940 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2502939 |
ttaaggagataaggaacaagatgagtgtcgcatctttggagcatctacctatctatctatctat |
2502876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 46094377 - 46094632
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46094377 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacctatctaaaaaaatattgtgacattttaccgtaaacacagtgagacaaggaa |
46094476 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46094477 |
tcacgagatcaagtaaataaaatgagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
46094576 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctat |
268 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
46094577 |
ttaaggagctgaggaacaagatgggtgtcgcatctttggagcatctatctatctat |
46094632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 53828968 - 53828705
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53828968 |
ttctccaatctaattgttaaacttaaattaaacactatgaaactttacctatctgaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
53828869 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
53828868 |
tcacgagatcaagtaaataaaagaagactaaaactgttacattgtcctactgttatatatgaagcagacattccaacaaaatttgtgaagcatgaaaagt |
53828769 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
53828768 |
ttaaggagctgaggaacaagatgggtgtcgcatctttggcgcatctatctatctatctatctat |
53828705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 34735800 - 34735530
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
34735800 |
ttctccaatctaattgttaaacttaaattaaaaactatgaaactttacaaatctaaaaaaatattgtgacattttatcataaacacattgagacaaggaa |
34735701 |
T |
|
| Q |
113 |
gcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcat |
205 |
Q |
| |
|
||| ||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
34735700 |
tcactgtattagagatcaagtaaataaagggagactgaaaccgctacattgccctactgctatatatgaagcagacatttcaacaaaatttgtgaagcat |
34735601 |
T |
|
| Q |
206 |
gacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34735600 |
gacaagtttgaggagctgaggaacaagatggatgtcgcatctttggagcatctgtctatctatctatctat |
34735530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 21631052 - 21630781
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
21631052 |
ttctccagtctaattgttaaacttaaattaaacactatgaaactttaactatctaaaaaaatattgtgacattttagcgtagacacattgagacaaggaa |
21630953 |
T |
|
| Q |
113 |
gcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatg-aagcagacgttccagcaaaatttgtgaagca |
204 |
Q |
| |
|
||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||| |
|
|
| T |
21630952 |
tcactgtattagagatcaagtaaataaagggagactgaaaccgctacattgtcctactgctatatatggaagctgactttccaacaaaatttgtgaagca |
21630853 |
T |
|
| Q |
205 |
tgacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
|||||||||| ||||| | |||||||| || ||||||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
21630852 |
tgacaagtttgaggagttaaggaacaagataggtgtcgcatctttggggcatctatctatctacctatctat |
21630781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 158 - 268
Target Start/End: Original strand, 20038761 - 20038870
Alignment:
| Q |
158 |
cctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatc |
257 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20038761 |
cctactgctatatatgaagcagacgtttaa-caaaatttgtgaagcatgacaagtttgaggagttgaggaacaagatgagtgtcgcatctttggagcatc |
20038859 |
T |
|
| Q |
258 |
tacctatctat |
268 |
Q |
| |
|
|| ||||||| |
|
|
| T |
20038860 |
tatttatctat |
20038870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 21804746 - 21804928
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||| |||||| ||||||| ||| |
|
|
| T |
21804746 |
ttctccaatctaattgttaaacttaaattaaacactatgaaactttaactatctaaaaaaatattgtgacattttagcgtagacacatagagacaaagaa |
21804845 |
T |
|
| Q |
113 |
gcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatat-gaagcagacgttcca |
187 |
Q |
| |
|
||| ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
21804846 |
tcactgtattagagatcaagtaaataaagggagactgaaaccgctacattgtcctactgctatatatggaagcagactttcca |
21804928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 52351731 - 52351994
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52351731 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacatatctaaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
52351830 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52351831 |
tcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagt |
52351930 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52351931 |
ttaaggagataaggaacaagatgagtgtcgcatctttggagcatctacctatctatctatctat |
52351994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 48268138 - 48268401
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48268138 |
ttctccaatttaattgttaaacttaaattaaacactatgaaactttacctatctaaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
48268237 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48268238 |
tcacgagatcaagtaaataaaaggagactaaaactgttacattgtcctactgctatatatgaagcagacgttccaacaaaatttgtgaagcatgacaagt |
48268337 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
48268338 |
ttaaggagctgaggaacaagatgagtgtcgcatctttggagcatctatctatttatctatctat |
48268401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 35872236 - 35872493
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnn--tattgtgacattttaccgtaaacacattgagacaagg |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35872236 |
ttctccaatctaattgttaaacttaaattaaacactatgaaactttacctatctaaaaaaaaatattgtgacattttaccgtaaacacattgagacaagg |
35872335 |
T |
|
| Q |
111 |
aagcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaa |
210 |
Q |
| |
|
|| || |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35872336 |
aatcatgagatcaagtaaataaaaggagactaaaaccgttacattgtcctatcactatatatgaagcagacgttccaacaaaatttgtgaagcatgacaa |
35872435 |
T |
|
| Q |
211 |
gtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctat |
268 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
35872436 |
gtttaaggagctgaggaacaagatgggtgtcgcatctttggagcatctatctatctat |
35872493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 7572228 - 7571965
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7572228 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacatatctaaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
7572129 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7572128 |
tcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagt |
7572029 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7572028 |
ttaaggagataaggaacaagatgagtgtcgcatctttggagcatctacctatctatctatctat |
7571965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 16666823 - 16666560
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16666823 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacatatctaaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
16666724 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16666723 |
tcacgagatcaagtaaataaaaggagactacaaacgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagt |
16666624 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16666623 |
ttaaggagataaggaacaagatgagtgtcgcatctttggagcatctacctatctatctatctat |
16666560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 43566147 - 43566245
Alignment:
| Q |
174 |
aagcagacgttccagcaaaatttgtgaagcatgacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctat |
272 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||| || ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
43566147 |
aagcagacgttccaacaaagtttgtgaagaatgacaagttttaggagctgaggaacaagataggtgtcacatctttggagcatctatctatctatctat |
43566245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 29457356 - 29457450
Alignment:
| Q |
178 |
agacgttccagcaaaatttgtgaagcatgacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctat |
272 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||| |||||||||||||||| || ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
29457356 |
agacgttccaacaaagtttgtgaagaatgacaagttttaggagctgaggaacaagataggtgtcacatctttggagcatctatttatctatctat |
29457450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 43566002 - 43566101
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
43566002 |
ttctccaatctaattgttaaacttaaattaaacattatgaaattttacctatcgaaaaaaatattgtgacattttaccataaacacaatgagacaaggaa |
43566101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 29457207 - 29457342
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| ||||||| ||||| |||| ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
29457207 |
ttctccaatctaattgttaaatttaaattaaacactatgaaattttacctatcgaaaaaaatattgtgacattttaccataaacacaatgagacaaggaa |
29457306 |
T |
|
| Q |
113 |
gcac-------gagatcaagtaaataaaaggagact |
141 |
Q |
| |
|
||| ||||||||||||||||| ||||||| |
|
|
| T |
29457307 |
tcactgtattagagatcaagtaaataaagggagact |
29457342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 13788234 - 13788497
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13788234 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacatatctaaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
13788333 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13788334 |
tcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagt |
13788433 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13788434 |
ttaaggagataaggaacaagatgagtgtcgcatctttggagcatctacctatctatctatctat |
13788497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 25805908 - 25805645
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25805908 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacatatctaaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
25805809 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25805808 |
tcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagt |
25805709 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25805708 |
ttaaggagataaggaacaagatgagtgtcgcatctttggagcatctacctatctatctatctat |
25805645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 22910937 - 22910667
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| ||||||| ||||| ||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22910937 |
ttctccaatctaattgttaaactaaaattaaacactatgaaattttacctatttaaaaaaatattgtgacattttaccgtaaacacattgagataaggag |
22910838 |
T |
|
| Q |
113 |
gcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcat |
205 |
Q |
| |
|
||| ||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22910837 |
tcactgtattagagatcaagtaaataaagggagactgaaaccgctacattatcctactgctatatatgaagcagacgttccaacaaaatttgtgaagcat |
22910738 |
T |
|
| Q |
206 |
gacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
22910737 |
gacaagtttgaggagttgaggaacaagatgagtgccgcatctttggagcatgtatctatctatctatctat |
22910667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 39625331 - 39625597
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39625331 |
ttctccaatctaattgttaaacttaaattatacactatgaaactttacccatctaaaaaaatattgtgacattttaccgtaaacacattgagacaaggaa |
39625430 |
T |
|
| Q |
113 |
gcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcat |
205 |
Q |
| |
|
|| ||||||||||||| ||| || | || ||||| |||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
39625431 |
tcaatgtattagagatcaagtaaagaaagggtggctggaaccgctacattgtcctattgctatatacgaagcagacgttcctacaaaaattgtgaagcat |
39625530 |
T |
|
| Q |
206 |
gacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctat |
272 |
Q |
| |
|
||||||||| ||||| |||| ||||| ||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
39625531 |
gacaagtttgaggagttgagaaacaagatgggtgtcacatctttggagcatctatctatctatctat |
39625597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 23725617 - 23725524
Alignment:
| Q |
117 |
gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaa |
210 |
Q |
| |
|
||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||||| |||||||| | ||||| || ||||||||||||| |
|
|
| T |
23725617 |
gagatcaagtaaacaaaagaaggctagaaccgttacattgtcctactgctatatatgaatgagacgttctaccaaaaattatgaagcatgacaa |
23725524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 28844927 - 28845189
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28844927 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacatgtctaaaaaaatattgtgacattttaccgtaaacacattgagacaatgaa |
28845026 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28845027 |
tcacgagatcaagtaaataaaaggagactgcaaccgttacattgtcatactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
28845126 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatcta |
275 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28845127 |
ttaaggagctgaggaacaagatgagtgtcgcatctttggagcatctacctacctatctatcta |
28845189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 10188225 - 10188488
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
10188225 |
ttctccaatctaattgttaaacttaaattaaacactatgaaactttaactatctaaaaaaatattgtgacattttagcgtagacacattgagacaaggaa |
10188324 |
T |
|
| Q |
113 |
gcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatg-aagcagacgttccagcaaaatttgtgaagca |
204 |
Q |
| |
|
||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||| |
|
|
| T |
10188325 |
tcactgtattagagatcaagtaaataaagggagactgaaaccgctacattgtcctactgctatatatggaagcggactttccaacaaaatttgtgaagca |
10188424 |
T |
|
| Q |
205 |
tgacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctat |
268 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
10188425 |
tgacaagtttgaggagctgaggaacaagatgggtgtcgcatctttggggcatctatctatctat |
10188488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 4140139 - 4140410
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| | |||||||||||| ||||| ||||||||||||||| |||| |||||| ||||||| ||| |
|
|
| T |
4140139 |
ttcttcaatctaattgttaaacttaaattaaatactatgaaactttaactatctaaaaaaatattgtgacattttagcgtagacacatcgagacaatgaa |
4140238 |
T |
|
| Q |
113 |
gcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatg-aagcagacgttccagcaaaatttgtgaagca |
204 |
Q |
| |
|
||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||| |
|
|
| T |
4140239 |
tcactgtattagagatcaagtaaataaagggagactgaaaccgctacattgtcctactgctatatatggaagcagactttccaacataatttgtgaagca |
4140338 |
T |
|
| Q |
205 |
tgacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctat |
276 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
4140339 |
tgacaagtttgaggagctgaggaacaagatgggtgtcgcatctttggggcatctatctatctatctatctat |
4140410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 917235 - 917103
Alignment:
| Q |
23 |
taattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaagcac------ |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||| |||| |||||||||||| ||| ||| |
|
|
| T |
917235 |
taattgttaaacttaaattaaacactatgaaattttacctatcgaaaaaaatattgtgacattttaccataaatacattgagacaaagaatcactatatt |
917136 |
T |
|
| Q |
117 |
-gagatcaagtaaataaaaggagactacaaccg |
148 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |
|
|
| T |
917135 |
agagatcaagtaaataaagggagactaaaaccg |
917103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 917100 - 917028
Alignment:
| Q |
174 |
aagcagacgttccagcaaaatttgtgaagcatgacaagtttaaggagctgaggaacaatatgagtgtcgcatct |
247 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
917100 |
aagcagacgt-ccaacaaagtttgtgaagcatgacaagttttaggagctgaggaacaggatgggtgtcgcatct |
917028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 5369023 - 5369122
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
5369023 |
ttctccaatctaattgttaaacgtaaattaaacactatgaaactttacctataaaaaaaaaatttgtgaaattttaccgtaaacacattaagacaaggaa |
5369122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 36993120 - 36993375
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36993120 |
ttctccaatctaattgttaaacttaaattaaacaatatgaaactttacctatctaaaaaaatattgtgacattttaccgtaaacacagtgagacaaggaa |
36993219 |
T |
|
| Q |
113 |
gcacgagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36993220 |
tcacgagatcaagtaaataaaatgagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagt |
36993319 |
T |
|
| Q |
213 |
ttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctat |
268 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
36993320 |
ttaaggagctgaggaacaagatgggtgtcgcatctttggagcatctatctatctat |
36993375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 37300211 - 37299945
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnntattgtgacattttaccgtaaacacattgagacaaggaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37300211 |
ttctccaatctaattgttaaacttaaattaaacactatgaaactttacatatctaaaaaaatattgtgacattttatcgtaaacacattgagacaaggaa |
37300112 |
T |
|
| Q |
113 |
gcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcat |
205 |
Q |
| |
|
||| ||||||||||||||||| ||||||| ||| | ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
37300111 |
tcactgtattagagatcaagtaaataaagggagactgaaactgctacattgccctactgctatatatgaagcagacattccaacaaaatttgtgaagcat |
37300012 |
T |
|
| Q |
206 |
gacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctat |
272 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||||||||||||||| || || |||||||||||| |
|
|
| T |
37300011 |
gacaagtttgaggagctgaggaacaagatgggtgtcgcatctttggagtatatatctatctatctat |
37299945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 13451 - 13717
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnn-tattgtgacattttaccgtaaacacattgagacaagga |
111 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| | ||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
13451 |
ttcttcaatctaattgttaaacttaaattaaacactttgaaactttacctatctaaaaaaaatattgtga-attttactataaacacattgagacaagga |
13549 |
T |
|
| Q |
112 |
agcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagca |
204 |
Q |
| |
|
| || || |||||||||| ||| | || ||| ||||| |||||||||||||||||||||||||| || |||||| | ||||| || ||||||| |
|
|
| T |
13550 |
atcattgtattagatatcaagtaaacaaaggaaggctagaaccgctacattgtcctactgctatatatgaatcaaacgttctaccaaaaattatgaagca |
13649 |
T |
|
| Q |
205 |
tgacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctat |
272 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||| ||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
13650 |
tgacaagtttgaggaggtgaggaacaagatgggtgtcacatctttggaacatctatctatatatctat |
13717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0516 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0516
Description:
Target: scaffold0516; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 4219 - 4490
Alignment:
| Q |
13 |
ttctccaatataattgttaaacttaaattaaacaatatgaaactttacatatctnnnnnnn-tattgtgacattttaccgtaaacacattgagacaagga |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| | ||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
4219 |
ttctccaatctaattgttaaacttaaattaaacactttgaaactttacctatctaaaaaaaatattgtgaaattttactgtaaacacattgagacaagga |
4318 |
T |
|
| Q |
112 |
agcac-------gagatcaagtaaataaaaggagactacaaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagca |
204 |
Q |
| |
|
| || || |||||||||| ||| | || ||| || || |||||||||||||| |||||| |||| ||||||||| | ||||| | ||||||| |
|
|
| T |
4319 |
atcattgtattagatatcaagtaaacaaaggaaggctagaatcgctacattgtcctactactatat-tgaatcagacgttctaacaaaaactatgaagca |
4417 |
T |
|
| Q |
205 |
tgacaagtttaaggagctgaggaacaatatgagtgtcgcatctttggagcatctacctatctatctatctatt |
277 |
Q |
| |
|
|||||||||| ||||| |||| ||||| ||| ||||| |||||||||| ||| || |||||||| |||||||| |
|
|
| T |
4418 |
tgacaagtttgaggaggtgagaaacaagatgggtgtcacatctttggaacatatatctatctatatatctatt |
4490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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