View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4986_low_8 (Length: 291)
Name: NF4986_low_8
Description: NF4986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4986_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 26610164 - 26610056
Alignment:
| Q |
178 |
ggattggaaccgcaagagcaattttaccaaattattatgttgtttatgttttacattttgtgtcacattgaaaccacttatttggtttggtatacttagg |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26610164 |
ggattggaaccgcaagagcaattttaccaaattattatattgtttatgttttagactttgtgtcacattgaaaccacttatttggttttgtatacttagg |
26610065 |
T |
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| Q |
278 |
tctcttgtt |
286 |
Q |
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||||||||| |
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| T |
26610064 |
tctcttgtt |
26610056 |
T |
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Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47817587 - 47817646
Alignment:
| Q |
1 |
cccacgactaagcttccaatcctttccctcttcaatctcattccccagcacttttttctt |
60 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47817587 |
cccacggctaagcttccaatcctttccctcttcaatctcattcccctgcacttttttctt |
47817646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9369986 - 9369927
Alignment:
| Q |
1 |
cccacgactaagcttccaatcctttccctcttcaatctcattccccagcacttttttctt |
60 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
9369986 |
cccacggctaagcttccaatcctttccctcttcaatctcattcctctgcacttttttctt |
9369927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23669131 - 23669072
Alignment:
| Q |
1 |
cccacgactaagcttccaatcctttccctcttcaatctcattccccagcacttttttctt |
60 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
23669131 |
cccacgaataagcttccaatcatttccctcttcaatctcattcccctgcacttttttctt |
23669072 |
T |
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