View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4987_high_1 (Length: 646)
Name: NF4987_high_1
Description: NF4987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4987_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 158 - 306
Target Start/End: Original strand, 15084757 - 15084905
Alignment:
| Q |
158 |
aggtgttaatgttttaactatttgttaaatgtactaagtcatttttagttgttctattatatattttattgattaaccatatgttttcaattttccattg |
257 |
Q |
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| T |
15084757 |
aggtgttaatgttttaactatttgttcaatgtactaagtcatttttagttgttttattatatattttgttgattaaccatatgttttcaatttttcatgg |
15084856 |
T |
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| Q |
258 |
gagatgttcggactattaaagaataaaatttatgatcaaaacaactatc |
306 |
Q |
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| T |
15084857 |
gagatgttcggactattaaagaataaaattcatgatgaaaataactatc |
15084905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 15084703 - 15084753
Alignment:
| Q |
84 |
attactatacttgaattcttaaacaagaatcttggttagtttatttttaac |
134 |
Q |
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| T |
15084703 |
attactatactcgaattcttaaacaagaatctttgttagtttatttttaac |
15084753 |
T |
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