View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4987_high_13 (Length: 312)

Name: NF4987_high_13
Description: NF4987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4987_high_13
NF4987_high_13
[»] chr2 (12 HSPs)
chr2 (23-142)||(4730682-4730801)
chr2 (25-136)||(35243106-35243218)
chr2 (128-189)||(4730610-4730671)
chr2 (75-125)||(12419537-12419587)
chr2 (75-125)||(12431597-12431647)
chr2 (73-136)||(20105337-20105402)
chr2 (99-136)||(39711724-39711761)
chr2 (74-122)||(39228901-39228949)
chr2 (74-125)||(5136187-5136238)
chr2 (75-122)||(9848112-9848159)
chr2 (74-125)||(18482108-18482159)
chr2 (86-119)||(38002026-38002059)
[»] scaffold0174 (2 HSPs)
scaffold0174 (23-142)||(30562-30681)
scaffold0174 (127-189)||(30490-30552)
[»] chr1 (6 HSPs)
chr1 (23-142)||(2688393-2688512)
chr1 (125-174)||(2688520-2688569)
chr1 (75-122)||(48563257-48563304)
chr1 (75-122)||(50959523-50959570)
chr1 (86-116)||(19757765-19757795)
chr1 (92-122)||(29013825-29013855)
[»] chr7 (5 HSPs)
chr7 (77-125)||(10623350-10623398)
chr7 (69-122)||(10019743-10019796)
chr7 (88-129)||(28302166-28302207)
chr7 (82-119)||(5907018-5907055)
chr7 (86-122)||(27900348-27900384)
[»] chr4 (3 HSPs)
chr4 (96-148)||(21481176-21481228)
chr4 (74-122)||(1745438-1745486)
chr4 (87-122)||(38011672-38011707)
[»] chr8 (3 HSPs)
chr8 (75-120)||(1029736-1029781)
chr8 (75-122)||(41566184-41566231)
chr8 (74-122)||(11954595-11954643)
[»] chr5 (1 HSPs)
chr5 (69-136)||(24099420-24099486)
[»] chr3 (2 HSPs)
chr3 (74-140)||(28159065-28159130)
chr3 (86-140)||(28180530-28180583)
[»] chr6 (3 HSPs)
chr6 (86-122)||(29032701-29032737)
chr6 (75-122)||(8210013-8210060)
chr6 (94-148)||(17459206-17459258)
[»] scaffold0756 (1 HSPs)
scaffold0756 (91-122)||(4094-4125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (75-140)||(353236-353297)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 4730801 - 4730682
Alignment:
Q  23 atcatcagagagtcaagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4730801 atcatcagagagtcaagcgtacatgccaccaaacacaacaagttacaatctgacgcgttagaactcagatcgtgggatgagtccaatacgttagtaacca 4730702  T
Q  123 aacagaccctttcgagttta 142  Q
    |||||||||||||| |||||    
T  4730701 aacagaccctttcgggttta 4730682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 35243218 - 35243106
Alignment:
Q  25 catcagagagtc-aagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaa 123  Q
    |||||||||||| ||||  ||| ||||||||||||||||||||| |||| || | |||| || |||||||| |||||||||||| |||| ||||||||||    
T  35243218 catcagagagtccaagcagacatgccaccaaacacaacaagttacaatctgatgtgttacatatcagatcgagggatgagtccattacgctagtaaccaa 35243119  T
Q  124 acagaccctttcg 136  Q
    |||||||||||||    
T  35243118 acagaccctttcg 35243106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 4730671 - 4730610
Alignment:
Q  128 accctttcgagtttatgaaacgaaagcaaaaggtcaagactgcacccaccaatctcagctct 189  Q
    ||||||||| | ||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  4730671 accctttcgggattatgaaaccaaagcaaaaggtcaagtctgcacccatcaatctcagctct 4730610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 12419537 - 12419587
Alignment:
Q  75 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 125  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||||||||    
T  12419537 acgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaac 12419587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 12431597 - 12431647
Alignment:
Q  75 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 125  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||||||||    
T  12431597 acgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaac 12431647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 20105402 - 20105337
Alignment:
Q  73 cgacgcgttagatctcagatcgtgggatgagtccaatacgtt--agtaaccaaacagaccctttcg 136  Q
    |||||||| ||| ||||||||| | |||||||||||||||||  ||||||||| ||||||||||||    
T  20105402 cgacgcgtaagaactcagatcgagtgatgagtccaatacgttaaagtaaccaatcagaccctttcg 20105337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 39711724 - 39711761
Alignment:
Q  99 atgagtccaatacgttagtaaccaaacagaccctttcg 136  Q
    |||||| |||||||||||||||||||||||||||||||    
T  39711724 atgagttcaatacgttagtaaccaaacagaccctttcg 39711761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 39228949 - 39228901
Alignment:
Q  74 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    ||||||| ||| ||||||||| |||||||||| ||||||||||||||||    
T  39228949 gacgcgtaagaactcagatcgagggatgagtcgaatacgttagtaacca 39228901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 5136238 - 5136187
Alignment:
Q  74 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 125  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| || ||||||    
T  5136238 gacgcgtaagaactcagatcgagggatgagtccaatacgttaatagccaaac 5136187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 9848159 - 9848112
Alignment:
Q  75 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    |||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  9848159 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaacca 9848112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 18482108 - 18482159
Alignment:
Q  74 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 125  Q
    ||||||| ||| ||||||||| ||||||||||||||| |||| |||||||||    
T  18482108 gacgcgtaagaactcagatcgagggatgagtccaatatgttaataaccaaac 18482159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 38002059 - 38002026
Alignment:
Q  86 ctcagatcgtgggatgagtccaatacgttagtaa 119  Q
    ||||||||| ||||||||||||||||||||||||    
T  38002059 ctcagatcgagggatgagtccaatacgttagtaa 38002026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 30681 - 30562
Alignment:
Q  23 atcatcagagagtcaagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    |||||||||||||||||| | ||||| |||||||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  30681 atcatcagagagtcaagcctgcacgcaaccaaacacaacaagttacaatctgacgcgttagaactcatatcgtgggatgagtccaatacgttagtaacca 30582  T
Q  123 aacagaccctttcgagttta 142  Q
    |||||||||||||| |||||    
T  30581 aacagaccctttcgggttta 30562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 30552 - 30490
Alignment:
Q  127 gaccctttcgagtttatgaaacgaaagcaaaaggtcaagactgcacccaccaatctcagctct 189  Q
    |||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  30552 gaccctttcgggtttatgaaaccaacgcaaaaggtcaagtctgcacccaccaatctcagctct 30490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 2688393 - 2688512
Alignment:
Q  23 atcatcagagagtcaagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    ||||||| ||||||||||  |||| |||||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  2688393 atcatcaaagagtcaagcacacacaccaccaaacacaacaagttacaatctgatgcgttagaactcagatcgtgggatgagtccaatacgttagtaacca 2688492  T
Q  123 aacagaccctttcgagttta 142  Q
    ||||||| |||||| |||||    
T  2688493 aacagactctttcgggttta 2688512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 2688520 - 2688569
Alignment:
Q  125 cagaccctttcgagtttatgaaacgaaagcaaaaggtcaagactgcaccc 174  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  2688520 cagaccctttcgggtttatgaaaccaaagcaaaaggtcaagactgcaccc 2688569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 48563304 - 48563257
Alignment:
Q  75 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    |||||| ||| || |||||||||||||||||||||| |||||||||||    
T  48563304 acgcgtaagaacttagatcgtgggatgagtccaatatgttagtaacca 48563257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 50959523 - 50959570
Alignment:
Q  75 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    |||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  50959523 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaacca 50959570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 19757795 - 19757765
Alignment:
Q  86 ctcagatcgtgggatgagtccaatacgttag 116  Q
    |||||||||||||||||||||||||||||||    
T  19757795 ctcagatcgtgggatgagtccaatacgttag 19757765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 122
Target Start/End: Original strand, 29013825 - 29013855
Alignment:
Q  92 tcgtgggatgagtccaatacgttagtaacca 122  Q
    |||||||||||||||||||||||||||||||    
T  29013825 tcgtgggatgagtccaatacgttagtaacca 29013855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 10623398 - 10623350
Alignment:
Q  77 gcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 125  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  10623398 gcgttagaactcagatcgagggatgagtccaatacgttagtaaccaaac 10623350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 10019743 - 10019796
Alignment:
Q  69 aatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    |||| ||||||| ||| |||| |||| |||||||||||||||||||||||||||    
T  10019743 aatcagacgcgtaagaactcaaatcgagggatgagtccaatacgttagtaacca 10019796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 28302166 - 28302207
Alignment:
Q  88 cagatcgtgggatgagtccaatacgttagtaaccaaacagac 129  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  28302166 cagatcgagggatgagtccaatacgttagtaaccaaatagac 28302207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 5907055 - 5907018
Alignment:
Q  82 agatctcagatcgtgggatgagtccaatacgttagtaa 119  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  5907055 agatctcatatcgagggatgagtccaatacgttagtaa 5907018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 27900348 - 27900384
Alignment:
Q  86 ctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  27900348 ctcagatcgagggatgagtccaatatgttagtaacca 27900384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 21481176 - 21481228
Alignment:
Q  96 gggatgagtccaatacgttagtaaccaaacagaccctttcgagtttatgaaac 148  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  21481176 gggatgagtccaattcgtgagtaaccaaacagaccctttcgagtttttgaaac 21481228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 1745486 - 1745438
Alignment:
Q  74 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    ||||||| ||| ||||||| | |||||||||||||||||||||||||||    
T  1745486 gacgcgtaagaactcagattgagggatgagtccaatacgttagtaacca 1745438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 38011672 - 38011707
Alignment:
Q  87 tcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    |||||||| |||||||||||||||||||||||||||    
T  38011672 tcagatcgagggatgagtccaatacgttagtaacca 38011707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 1029736 - 1029781
Alignment:
Q  75 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaac 120  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||    
T  1029736 acgcgtaagaactcagatcgtgggatgagtccaatacgttagtaac 1029781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 41566231 - 41566184
Alignment:
Q  75 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  41566231 acgcgtaagaactcagatcgtgggatgagtctaatacgttagtaacca 41566184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 11954595 - 11954643
Alignment:
Q  74 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    ||||||| ||| ||||||||  |||||||||||||||||||| ||||||    
T  11954595 gacgcgtaagaactcagatccagggatgagtccaatacgttaataacca 11954643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 24099486 - 24099420
Alignment:
Q  69 aatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcg 136  Q
    |||||||||||| | | ||||||||| ||||||||| |||||||||| ||||| ||||||||||||||    
T  24099486 aatccgacgcgtaaaaactcagatcgagggatgagttcaatacgttaataacc-aacagaccctttcg 24099420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 28159065 - 28159130
Alignment:
Q  74 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 140  Q
    |||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||| ||||||| |||||    
T  28159065 gacgtgtttgatctcagatcgagggatgagttcaatatgttagtaaccaaaca-acccttttgagtt 28159130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 28180530 - 28180583
Alignment:
Q  86 ctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 140  Q
    ||||||| | ||||||||| ||||||||||||||||||||| ||||||| |||||    
T  28180530 ctcagattgagggatgagttcaatacgttagtaaccaaaca-acccttttgagtt 28180583  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 29032737 - 29032701
Alignment:
Q  86 ctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    ||||||||| |||||||||||||||||||||||||||    
T  29032737 ctcagatcgagggatgagtccaatacgttagtaacca 29032701  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 8210060 - 8210013
Alignment:
Q  75 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 122  Q
    |||||| ||| ||||||||| ||||||||||||||| |||||||||||    
T  8210060 acgcgtaagaactcagatcgagggatgagtccaataagttagtaacca 8210013  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 17459206 - 17459258
Alignment:
Q  94 gtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtttatgaaac 148  Q
    |||||||||||||||||||||||||| |  ||||||||||||| |||| ||||||    
T  17459206 gtgggatgagtccaatacgttagtaatc--acagaccctttcgggtttttgaaac 17459258  T

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Target: scaffold0756 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 4125 - 4094
Alignment:
Q  91 atcgtgggatgagtccaatacgttagtaacca 122  Q
    ||||||||||||||||||||||||||||||||    
T  4125 atcgtgggatgagtccaatacgttagtaacca 4094  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 353236 - 353297
Alignment:
Q  75 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 140  Q
    |||||| ||| ||||||||| ||||||||||||||| || ||||||    ||||||||||||||||    
T  353236 acgcgtaagaactcagatcgagggatgagtccaatatgtcagtaac----cagaccctttcgagtt 353297  T

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