View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4987_high_15 (Length: 308)

Name: NF4987_high_15
Description: NF4987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4987_high_15
NF4987_high_15
[»] chr4 (1 HSPs)
chr4 (1-298)||(42468007-42468296)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 42468296 - 42468007
Alignment:
Q  1 aataaaagtgtgactctttgttgttttccacatatctagtaattgttggcttctgttgttaattacgtaagctagctacatattgatccgcatcacgcag 100  Q
    |||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  42468296 aataaaagtgtgactccttgttgttttccacata-------attgttggcttctgttgttaattatgtaagctagctacatattgacctgcatcacgcag 42468204  T
Q  101 gatgaaaataatataagcttcgttatgtatttcatccctacaaatatattgttactagtcaatatgtcttttccattaataatgagtgtatacttattga 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42468203 gatgaaaataatataagcttcattatgtatttcatccctacaaatatattg-tactagtcaatatgtcttttccattaataatgagtgtatgcttattga 42468105  T
Q  201 gctattacttgctcagatgtgtcgaagttttctggtcnnnnnnnnctcttggataaaagattcaacatttactgatagaaaactcgctataagaataa 298  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42468104 gctattacttgctcagatgtgtcgaagttttctggtcttttttctctcttggataaaagattcaacatttactgatagaaaactcgctataagaataa 42468007  T

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