View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4987_high_16 (Length: 306)

Name: NF4987_high_16
Description: NF4987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4987_high_16
NF4987_high_16
[»] chr3 (1 HSPs)
chr3 (1-296)||(42480027-42480320)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 42480027 - 42480320
Alignment:
Q  1 ccggtgcttcagggttagttgttgggagctgagaagcaatttcaataggtgaaatttgagcaccaggtccagctttagcaatgatttctaagagatcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42480027 ccggtgcttcagggttagttgttgggagctgagaagcaatttcaataggtgaaatttgagcaccaggtccagctttagcaatgatttctaagagatcaag 42480126  T
Q  101 ttcaagagctgattttaaaaccatgggaagaactgaggcacttgctagttgcatggcgaagaggtttgcctcttcatctgatatgtgagttggtgttatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42480127 ttcaagagctgattttaaaaccatgggaagaactgaggcacttgctagttgcatggcgaagaggtttgcttcttcatctgatatgtgagttggtgttatt 42480226  T
Q  201 tgagtttcacctgttgaacccatggttgtgattgatgaggtttctgtgagattgtagtggtgatttgaagaatgtagaagaatgaaggtgtctgtg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  42480227 tgagtttcacctgttgaacccatggttgtgattgatgaggtt--tttgagattgtagtggtgatttgaagaatgtggaagaatgaaggtgtgtgtg 42480320  T

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