View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4987_high_2 (Length: 593)
Name: NF4987_high_2
Description: NF4987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4987_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 163 - 422
Target Start/End: Complemental strand, 37642938 - 37642663
Alignment:
| Q |
163 |
gtcagtgtaatgtactataggttttgattcgtatttatttctaactctagagaataaaagaccgtgtatcaaactttaatgcaccaaagttcatggataa |
262 |
Q |
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| T |
37642938 |
gtcaatgtaatgtactataggttttgattcgtatttatttctaactctagagaataaaagaccgtgtatcaaactccaatgcaccaaagttcatggataa |
37642839 |
T |
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| Q |
263 |
gccacattaggttaaatcagttttatgattttaatgctttctaatattctatcatagtgacacacaattattagctaa----------------accgcg |
346 |
Q |
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| T |
37642838 |
gccgcattaggttaaatcagttttatgattttaatgctttctaatattctatcatagtgacacacaattattagctaaaccaacatagccttctaccgcg |
37642739 |
T |
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| Q |
347 |
ctcatggtgtttctttcggtcatcggttgggcacataaagtatgacataagctttttggcacctttaaattaagaa |
422 |
Q |
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| T |
37642738 |
ctcatggtgtttctttcgctcatcggttgggcacataaagtatgacataagctttttggcacctttaaattaagaa |
37642663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 43075178 - 43075244
Alignment:
| Q |
45 |
agcagagaggtacagaagagaatgaaagtgaaaatggtgtgaaagggaagaaggaatggaccactga |
111 |
Q |
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| T |
43075178 |
agcagagaggtacagaagagaatgaaagtgaaaatggtgtgaaagggaagaaggaatggaccactga |
43075244 |
T |
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