View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4987_high_5 (Length: 359)
Name: NF4987_high_5
Description: NF4987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4987_high_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 38677610 - 38677263
Alignment:
| Q |
10 |
attattctaaaacactttgattttctcttaatcggattattatatatttcttgagttgcaagttaagcaaggatttttaaaaaaccacaatgcaatcccc |
109 |
Q |
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| T |
38677610 |
attattctaaaacactttgattttctcttaatcggattattatatatttcttgagttgcaagttaagcaaggatttttaaaaaaccacaatgcaatcccc |
38677511 |
T |
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| Q |
110 |
tttcttgccgctattgttcacttcaattttgggggtattgtaaacgaattgcatactgttgtattttaatttcttgatgatactttttatcttttgattc |
209 |
Q |
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| T |
38677510 |
tttcttgcggctattgttcacttcaattttgggggtattgtaaatgaa--gcatactgttgtattttaatttcttgatgatactttttatcttttgattc |
38677413 |
T |
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| Q |
210 |
tgatatcagtgttctgtgacattttgttcaatgggttaatttattttgattattcaaaaaatttgaaaaattattcaatttagtcaataactttgtatca |
309 |
Q |
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| T |
38677412 |
tgatatcagtgttctgtgacattttgttcaatgggttaatttattttgattattcaaaaaatttgaaaaattattcaatttagtcaataactttgtatca |
38677313 |
T |
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| Q |
310 |
gggctggaagatatgactaacaatttgaaccattcaaattatgagaaatt |
359 |
Q |
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| T |
38677312 |
gggctggaagatatgactaacaatttgaaccattcaaattatgagaaatt |
38677263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 320
Target Start/End: Complemental strand, 38673509 - 38673466
Alignment:
| Q |
277 |
aaattattcaatttagtcaataactttgtatcagggctggaaga |
320 |
Q |
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| T |
38673509 |
aaattattcattgtagtcaataactttgtatctgggctggaaga |
38673466 |
T |
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