View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4987_high_7 (Length: 357)
Name: NF4987_high_7
Description: NF4987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4987_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 39381181 - 39380865
Alignment:
| Q |
12 |
agcagaacctgtggaaacagattattgaatcaagatagtaagtgtctatttaaaccgatttatttgagattacctactagcataagtatttgggaatctc |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
39381181 |
agcagaacctgcagaaacagattattgaatcaagatagtaagtgtatatttaaaccgacttatttgagattacctactagcataagtatttgtgaatatc |
39381082 |
T |
|
| Q |
112 |
tttaagagagtttatagaaacaacttatttattattacatgtccataaacaattttgaacttatttacataagctcttagctctccataataatttaggg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39381081 |
tttaagagagtttatagaaacaacttatttattattaaatgtccataaacaattttgaacttatttacataagctcttagctctccataataatttaggg |
39380982 |
T |
|
| Q |
212 |
aaaaagcacatagtttacatgaaaatagtttgaattcacttatttgaggttatctactgaaataagcacttaacttaagtggtgatttaaagttatttcc |
311 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39380981 |
aaaaagcacatagtttaaatgaaaatagtttgacttcacttatttgaggttatctactgaaataagcacttaacttaagtggtgatttaaagttatttcc |
39380882 |
T |
|
| Q |
312 |
ataataaggtgttgagt |
328 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
39380881 |
ataataaggtgttgagt |
39380865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 24048690 - 24048645
Alignment:
| Q |
239 |
gtttgaattcacttatttgaggttatctactgaaataagcacttaa |
284 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
24048690 |
gtttgaatttacttatttgagtttatctactgacataagtacttaa |
24048645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 6987738 - 6987783
Alignment:
| Q |
143 |
ttattacatgtccataaacaattttgaacttatttacataagctct |
188 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
6987738 |
ttatgacatgtccataaactattttcaacttatttccataagctct |
6987783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 2811621 - 2811581
Alignment:
| Q |
239 |
gtttgaattcacttatttgaggttatctactgaaataagca |
279 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
2811621 |
gtttgaattgacttatttgaggttatctactggcataagca |
2811581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 3973692 - 3973648
Alignment:
| Q |
239 |
gtttgaattcacttatttgaggttatctactgaaataagcactta |
283 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
3973692 |
gtttggattcacttatttgagcttatccactgatataagcactta |
3973648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University