View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4988-Insertion-2 (Length: 959)

Name: NF4988-Insertion-2
Description: NF4988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4988-Insertion-2
NF4988-Insertion-2
[»] chr4 (12 HSPs)
chr4 (136-678)||(52813953-52814496)
chr4 (223-424)||(41879425-41879627)
chr4 (252-371)||(40483746-40483865)
chr4 (252-361)||(52619512-52619621)
chr4 (272-363)||(20543688-20543779)
chr4 (259-313)||(9690012-9690066)
chr4 (252-353)||(18443375-18443476)
chr4 (694-768)||(41879080-41879155)
chr4 (259-317)||(48029240-48029298)
chr4 (259-312)||(53569599-53569652)
chr4 (259-359)||(27299756-27299856)
chr4 (326-359)||(19119734-19119767)
[»] scaffold0189 (1 HSPs)
scaffold0189 (138-959)||(5558-6379)
[»] chr2 (8 HSPs)
chr2 (140-627)||(1159129-1159617)
chr2 (328-787)||(38927182-38927642)
chr2 (259-367)||(6823004-6823112)
chr2 (272-363)||(11195954-11196045)
chr2 (274-365)||(18634570-18634661)
chr2 (259-354)||(31265815-31265910)
chr2 (252-356)||(7300261-7300364)
chr2 (282-363)||(44941260-44941341)
[»] chr3 (11 HSPs)
chr3 (224-946)||(7935497-7936226)
chr3 (138-376)||(13700559-13700798)
chr3 (252-503)||(21399966-21400217)
chr3 (261-437)||(47748755-47748931)
chr3 (252-437)||(14306855-14307040)
chr3 (259-364)||(34829009-34829114)
chr3 (252-367)||(46249299-46249414)
chr3 (252-365)||(35216345-35216458)
chr3 (252-314)||(4963947-4964009)
chr3 (252-353)||(5789937-5790038)
chr3 (252-311)||(15275474-15275533)
[»] chr7 (7 HSPs)
chr7 (137-487)||(27096609-27096960)
chr7 (137-487)||(27181343-27181694)
chr7 (252-437)||(8723495-8723680)
chr7 (247-367)||(27724546-27724666)
chr7 (252-371)||(44846215-44846334)
chr7 (252-365)||(34103062-34103175)
chr7 (333-371)||(13845519-13845557)
[»] chr1 (9 HSPs)
chr1 (136-431)||(5287465-5287761)
chr1 (265-959)||(40563407-40564101)
chr1 (8-123)||(48390920-48391035)
chr1 (252-384)||(18959771-18959903)
chr1 (249-352)||(28357471-28357574)
chr1 (259-359)||(13868265-13868365)
chr1 (259-363)||(33150585-33150689)
chr1 (436-466)||(5287751-5287781)
chr1 (259-316)||(49458320-49458377)
[»] chr5 (8 HSPs)
chr5 (136-331)||(374769-374965)
chr5 (252-365)||(379496-379609)
chr5 (256-353)||(14055095-14055192)
chr5 (259-437)||(35378527-35378704)
chr5 (252-317)||(13735380-13735445)
chr5 (250-311)||(26904617-26904678)
chr5 (259-364)||(5909508-5909613)
chr5 (326-365)||(16906942-16906981)
[»] chr8 (5 HSPs)
chr8 (267-505)||(12247849-12248086)
chr8 (252-365)||(15438752-15438865)
chr8 (252-365)||(15530056-15530169)
chr8 (252-359)||(9510379-9510486)
chr8 (252-314)||(6244732-6244794)
[»] chr6 (4 HSPs)
chr6 (252-620)||(14497723-14498089)
chr6 (252-365)||(31706354-31706467)
chr6 (274-316)||(33095576-33095618)
chr6 (247-311)||(29977513-29977577)
[»] scaffold0246 (1 HSPs)
scaffold0246 (252-371)||(21685-21804)
[»] scaffold0321 (1 HSPs)
scaffold0321 (247-365)||(17618-17736)
[»] scaffold0048 (2 HSPs)
scaffold0048 (251-365)||(50898-51012)
scaffold0048 (251-365)||(64193-64307)
[»] scaffold0555 (1 HSPs)
scaffold0555 (259-316)||(7258-7315)


Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 136 - 678
Target Start/End: Original strand, 52813953 - 52814496
Alignment:
Q  136 ggagaaatgaaaatgaaatattataacttc-gcgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaactgtcacaaagt 234  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  52813953 ggagaaataaaaatgaaatattataacttcagcgatggaaacgctttagtacaaggtgtactaaaatgttccaccccggtaaagacaactgtcacaaagt 52814052  T
Q  235 ataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagcc 334  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  52814053 ataattacaaggaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagcc 52814152  T
Q  335 accacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaac 434  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||| || || |||||| |||||| |||||||||||||||||||||    
T  52814153 accacaacgaatgaaattttactttatcgaataactgctcaataggtgttgctatgttgttgaacaatctgttgtttctttcattccacaacaaccaaac 52814252  T
Q  435 acacaacaaccataataattgaagaaaagagcgacacgcctttgtataacctgaataatgaatgaattggtagaagtgctcactgacattatctgtatca 534  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52814253 acacaacaaccataataactgaagaaaagagcggcacgcctttgtataacctgaataatgaatgaattggtagaaatgctcactgacattatctgtatca 52814352  T
Q  535 acaccaatcactccaatccaatatttgataagttgctatagagaaccaaatacatgacaatgtaagaacaagtgagaagccgactcctctataccacacc 634  Q
    |||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52814353 acaccagtcactccaatccaagatctgataagttgccatagagaaccaaatacatgacaatgtaagaacaagtgagaagccgactcctctagaccacacc 52814452  T
Q  635 ccgacacgcataatgtgtttgtgacctgcgaaataccgcgcctt 678  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  52814453 ccgacacgcataatgtgtttgtgacctgcgaaataccacgcctt 52814496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 223 - 424
Target Start/End: Complemental strand, 41879627 - 41879425
Alignment:
Q  223 ctgtcacaaagtataattataag-gaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttg 321  Q
    ||||||||||||||| ||| ||| ||||| |||||| ||||| | ||||  ||||||||||||||||||  ||||||||||||||| ||||||||||||     
T  41879627 ctgtcacaaagtatatttacaagagaaaagtcagtcgatacctagacaaagtaaagggttcgaccaccagttttgagaaccgtacataaaagtggtttta 41879528  T
Q  322 ttgcctttaagccaccacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattcc 421  Q
    ||  |||| |  ||||||||||| |||||||||||||||||||| |  |||||||||| |||| | ||||| || || | |||| |||||||||||||||    
T  41879527 ttagcttttaatcaccacaacgagtgaaatttaactttatctaagagttgctcaatagatgtttcagtgttattgaacagtctgttgtttcgttcattcc 41879428  T
Q  422 aca 424  Q
    |||    
T  41879427 aca 41879425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 371
Target Start/End: Original strand, 40483746 - 40483865
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||||| |||||||||  |||| |||| ||||||||| || |||||||||| |||||| ||||  || ||  ||||||||||||| |  |||||||||    
T  40483746 tcagtcaagacccaaacacaataaggggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaat 40483845  T
Q  352 ttaactttatctaacaactg 371  Q
    ||||||| |||||| |||||    
T  40483846 ttaacttgatctaataactg 40483865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 361
Target Start/End: Complemental strand, 52619621 - 52619512
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| ||||||||||| |  ||||||| ||||||||| || ||||| | |||||||||| |||| || ||| |||| |||||||| | ||||||||||    
T  52619621 tcagtcgatacccaaacactgaaaagggtccgaccaccatctctgagagctgtacacaaaattggtgtttttggcttttagccaccaaagcgaatgaaat 52619522  T
Q  352 ttaactttat 361  Q
    ||| ||||||    
T  52619521 ttagctttat 52619512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 272 - 363
Target Start/End: Original strand, 20543688 - 20543779
Alignment:
Q  272 ataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatct 363  Q
    ||||||||| ||||||||| ||||| | ||| |||| |||| ||| ||||||  ||||||||||||| || ||||||||| |||||||||||    
T  20543688 ataaagggtccgaccaccatctttgggtaccatacataaaattggctttgttagctttaagccaccataaagaatgaaatctaactttatct 20543779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 9690012 - 9690066
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaag 313  Q
    ||||||||||||  |||||||||||||||||| ||||||||||| ||||||||||    
T  9690012 atacccaaacaaagtaaagggttcgaccaccatctttgagaaccatacacaaaag 9690066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 252 - 353
Target Start/End: Complemental strand, 18443476 - 18443375
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| |||| |||||||  ||||||||||||||||||  | ||||||| ||||||||||||||| || |   |||| | |||||| ||||||||||||    
T  18443476 tcagtcgatactcaaacaaagtaaagggttcgaccaccatttctgagaactgtacacaaaagtggtgttatcaacttttaaccaccaaaacgaatgaaat 18443377  T
Q  352 tt 353  Q
    ||    
T  18443376 tt 18443375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 41879155 - 41879080
Alignment:
Q  694 gttggtaacctgtctttcagcagtcgccacgc-acaatggaaactttcaagggaacctgctgatgccaaacaagat 768  Q
    ||||||||||||||||||||||| |||||||| || || || || ||||| || ||||||| ||||||||||||||    
T  41879155 gttggtaacctgtctttcagcagacgccacgcgaccatagacaccttcaaagggacctgcttatgccaaacaagat 41879080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 48029240 - 48029298
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggt 317  Q
    |||||||||||| | ||| ||| ||||||||| ||||||||||||||||||||| ||||    
T  48029240 atacccaaacaaaacaaatggtccgaccaccatctttgagaaccgtacacaaaattggt 48029298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Original strand, 53569599 - 53569652
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaa 312  Q
    ||||||||||||  |||||||| ||||||||| || ||||||||||||||||||    
T  53569599 atacccaaacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaa 53569652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 27299756 - 27299856
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 358  Q
    |||||||||||  ||||||||| | ||||||| || |||| ||||| |||||||||||| || ||  ||||||||||||| || || ||||| || ||||    
T  27299756 atacccaaacataataaagggtccaaccaccatctgtgagtaccgtgcacaaaagtggtcttattagctttaagccaccaaaaagagtgaaactttactt 27299855  T
Q  359 t 359  Q
    |    
T  27299856 t 27299856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 19119734 - 19119767
Alignment:
Q  326 ctttaagccaccacaacgaatgaaatttaacttt 359  Q
    ||||||||||||| ||||||||||||||||||||    
T  19119734 ctttaagccaccataacgaatgaaatttaacttt 19119767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 138 - 959
Target Start/End: Original strand, 5558 - 6379
Alignment:
Q  138 agaaatgaaaatgaaatattataacttcg-cgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaactgtcacaaagtat 236  Q
    |||||| ||||||||||||  ||||| || ||||| |||| | | |||||||||||||||||| ||||||| ||  | ||| | ||||||||||||||||    
T  5558 agaaatcaaaatgaaatatattaactacggcgatgtaaacacctcagtacaaggtgtactaaa-tgttccaacccggcaaaca-aactgtcacaaagtat 5655  T
Q  237 aattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccac 336  Q
    ||||| ||| | || |||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| || ||| |||||||    
T  5656 aattacaagaataagtcagtcgataccgaaacaatatatagggttcgatcaccaactttgagaaccgtacacaaaaatggttttgatggcttcaagccac 5755  T
Q  337 cacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaacac 436  Q
    | || || ||||||||| ||||||||||| | |||||||||||||||||| |||||||| || | |||| |||||| |||||||||||||||||||||||    
T  5756 cgcaccggatgaaattttactttatctaatagctgctcaataggtgttgcagtgtttttgaacagtctgttgtttcattcattccacaacaaccaaacac 5855  T
Q  437 acaacaaccataataattgaagaaaagagcgacacgcctttgtataacctgaataatgaatgaattggtagaagtgctcactgacattatctgtatcaac 536  Q
    |||| | |||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||    
T  5856 acaaaagccataataattgaagaaaagagtgacgagcctttgtataacctgaataatgaataaattggtggaagtgctcactgacattgtctgtatcaac 5955  T
Q  537 accaatcactccaatccaatatttgataagttgctatagagaaccaaatacatgacaatgtaagaacaagtgagaagccgactcctctataccacacccc 636  Q
    |||| |||||||||||||| ||  |||||| ||| | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||     
T  5956 accagtcactccaatccaagatcagataagctgccagagagaaccaaaaacatgacaatgtaagaacaagtgagaggccgactcctctataccgcaccct 6055  T
Q  637 gacacgcataatgtgtttgtgacctgcgaaataccgcgcctttggaaattggtttttgttggtaacctgtctttcagcagtcgccacgc-acaatggaaa 735  Q
    || |||||||| |||| ||||||||| | ||||||||||||||||| ||||||||| || |||||| ||||||||||||  |||||||| ||||||||||    
T  6056 gaaacgcataacgtgtctgtgacctgagtaataccgcgcctttggagattggttttagtgggtaacttgtctttcagcaaccgccacgcaacaatggaaa 6155  T
Q  736 ctttcaagggaacctgctgatgccaaacaagattagttgtctcgtctagaactggggctgccatatatgttagaacatggtaggcgtctctcactgtgta 835  Q
    ||||||||||||||||||||||||| ||||| || | |||||||||||||   |||||| |||| ||||||||| |||| ||||||||||| ||| ||||    
T  6156 ctttcaagggaacctgctgatgccatacaaggtttgctgtctcgtctagattaggggcttccatgtatgttagagcatgataggcgtctcttactatgta 6255  T
Q  836 atcgacatgattgttcggttcccatatccacccgtcagaaacattcagctgaacaataacattagtcaataaaattttacact-ctctaccaactccttc 934  Q
    | || |||| ||||  || ||||||| ||||| |||| ||||||||| ||| |||| ||||||||||||||||||  || ||| ||||||||||||| ||    
T  6256 accggcatgtttgtctggctcccatagccacctgtcaaaaacattcaactgtacaacaacattagtcaataaaatcctatactcctctaccaactcc-tc 6354  T
Q  935 ctcccacacccacagacgtctcctc 959  Q
    |||||||||||||| ||||||||||    
T  6355 ctcccacacccacaaacgtctcctc 6379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 140 - 627
Target Start/End: Complemental strand, 1159617 - 1159129
Alignment:
Q  140 aaatgaaaatgaaatattataacttc-gcgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaa-ctgtcacaaagtata 237  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||| ||  |||||||||| |||||||||||||||    
T  1159617 aaatcaaaatgaaatattataacttcagcgatggaaacgctttagtacaaggtgtactaaa-tgttccaacccggtaaaaacaaactgtcacaaagtata 1159519  T
Q  238 attataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccacc 337  Q
    |||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||    
T  1159518 attataagaaaaagtcggtcaatacccaaacaatataaagggttcgaccaccaattttgagaaccgtacacaaaagtggtttttttagctttaagccacc 1159419  T
Q  338 acaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaacaca 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| || ||||||||||||| |||||||||||||||||    
T  1159418 acaacgaatgaaatttaactttatctaacaactgctcaataggtgttgcagtgtttttgaacaatttgttgtttcgttcatttcacaacaaccaaacaca 1159319  T
Q  438 caacaaccataataattgaagaaaagagcgacacgcctttgtataacctgaataatgaatgaattggtagaagtgctcactgacattatctgtatcaaca 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1159318 caacaaccataataattgaagaaaagagcgacacgcctttgtataacctgaataatgaatgaattggtagaagtgctcactgacattatatgtatcaaca 1159219  T
Q  538 ccaatcactccaatccaatatttgataagttgctatagagaaccaaatacatgacaatgtaagaacaagtgagaagccgactcctctata 627  Q
    ||| |||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  1159218 ccagtcactccaatccaagatctgataagttgccatagagaaccaaaaacatgacaatgtaagaacaagtgagaagtcgactcctctata 1159129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 328 - 787
Target Start/End: Complemental strand, 38927642 - 38927182
Alignment:
Q  328 ttaagccaccacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaaca 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||| |||||||||||| ||    
T  38927642 ttaagccaccacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgcagtgtttttgaacaatctgttgttttgttcattccacagca 38927543  T
Q  428 accaaacacacaacaaccataataattgaagaaaagagcgacacgcctttgtataacctgaataatgaatgaattggtagaagtgctcactgacattatc 527  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38927542 accaaacacacaacaaccataataattgaagaaaagagcggcaagcctttgtataacctgaataatgaatgaattggtagaagtgctcactgacattatc 38927443  T
Q  528 tgtatcaacaccaatcactccaatccaatatttgataagttgctatagagaaccaaatacatgacaatgtaagaacaagtgagaagccgactcctctata 627  Q
    |||||||||||||||||||||||||||| || ||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38927442 tgtatcaacaccaatcactccaatccaagatctgataagttgacagagagaaccaaatacgtgacaatgtaagaacaagtgagaagccgactcctctata 38927343  T
Q  628 ccacaccccgacacgcataatgtgtttgtgacctgcgaaataccgcgcctttggaaattggtttttgttggtaacctgtctttcagcagtcgccacgc-a 726  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||  |||||||| |    
T  38927342 ccacaccccgacacgcataatgtgtttgtgacctgcgaaataccgcacctttggagattggtttttgttgataacctatctttcagcaaccgccacgcaa 38927243  T
Q  727 caatggaaactttcaagggaacctgctgatgccaaacaagattagttgtctcgtctagaac 787  Q
    |||||||||||||||||| || ||||||||||||||||||||||  ||| |||||| ||||    
T  38927242 caatggaaactttcaaggaaatctgctgatgccaaacaagattaactgtatcgtcttgaac 38927182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 259 - 367
Target Start/End: Original strand, 6823004 - 6823112
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 358  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||||||||||| |||| || ||  |||| | |||||| ||||||||| ||||  |||    
T  6823004 atacccaaacaaagtaaagggttcgaccaccatctttgagaaccgtacacaaaattggtgttattagcttttaaccaccataacgaatgatattttgctt 6823103  T
Q  359 tatctaaca 367  Q
    | |||||||    
T  6823104 tttctaaca 6823112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 272 - 363
Target Start/End: Original strand, 11195954 - 11196045
Alignment:
Q  272 ataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatct 363  Q
    ||||||||| ||||||||| ||||||| |||| ||| |||| ||  ||||||  ||||||||||||| || || |||||||| |||||||||    
T  11195954 ataaagggtccgaccaccatctttgagtaccgaacataaaattgactttgttagctttaagccaccataaagagtgaaattttactttatct 11196045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 18634570 - 18634661
Alignment:
Q  274 aaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatctaa 365  Q
    ||||||| ||||||||| || ||||| || |||||||| ||||| || ||  ||||||| ||||| ||| |||||||||||||||| |||||    
T  18634570 aaagggtccgaccaccatctctgagagccatacacaaacgtggtattattagctttaagtcaccaaaacaaatgaaatttaactttttctaa 18634661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 259 - 354
Target Start/End: Original strand, 31265815 - 31265910
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaattta 354  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| | |||||||||||||| || |   |||| |||||| | |||||||| ||||||    
T  31265815 atacccaaacaaagtaaagggtccgaccaccatctttgagaatcatacacaaaagtggtattatgagcttttagccactaaaacgaatggaattta 31265910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 7300261 - 7300364
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| |||||||||||  | ||||||| ||||||||| |||||| ||||| ||||||| ||||   | ||| ||||||||||| | ||||| ||||||    
T  7300261 tcagtcgatacccaaacataacaaagggtccgaccaccatctttgacaaccgcacacaaacgtgg-catattggctttaagccactaaaacgagtgaaat 7300359  T
Q  352 ttaac 356  Q
    |||||    
T  7300360 ttaac 7300364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 44941341 - 44941260
Alignment:
Q  282 cgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatct 363  Q
    ||||||||| || || |||||||||||||| |||   |||||  |||| |||||||| ||||||||||| || |||||||||    
T  44941341 cgaccaccatctctgtgaaccgtacacaaatgtgacattgttagcttttagccaccaaaacgaatgaaactttactttatct 44941260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 224 - 946
Target Start/End: Original strand, 7935497 - 7936226
Alignment:
Q  224 tgtcacaaagtataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgtt 323  Q
    |||||||||||||||||| ||  |||| |||||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7935497 tgtcacaaagtataattacaaataaaagtcagtcgatacccagacaataaaaagggttcgactaccaactttgagaaccgtacacaaaagtggttttgtt 7935596  T
Q  324 gcctttaagccaccacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccac 423  Q
    | |||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||| | |||||||| || |  ||| |||||||||||||||||    
T  7935597 ggctttaagccaccacaaagaatgaaattttactttatctaacagctgttcaataggtgtttcagtgtttttgaacagcctgttgtttcgttcattccac 7935696  T
Q  424 aacaaccaaacacacaacaaccataataattgaagaaaagagcgaca---cgcctttgtataacctgaataatgaatgaattggtagaagtgctcactga 520  Q
    | ||||||||| ||||| | |||||||||| | | ||| || || |    ||||||||||||||||||||||||||| |||||||| || ||  ||||||    
T  7935697 agcaaccaaacgcacaaaagccataataatagtaaaaatgaacgtcgagccgcctttgtataacctgaataatgaataaattggtaaaaatgggcactga 7935796  T
Q  521 cattatctgtatcaacaccaatcactccaatccaatatttgataagttgctatagagaaccaaatacatgacaatgtaagaacaagtgagaagccgactc 620  Q
    |||| || ||||||||||||||||| ||||||||| || ||||||| ||| | ||||||||||| ||| |||||||||||||||| || || ||||||||    
T  7935797 cattgtcagtatcaacaccaatcacgccaatccaagatctgataagctgccagagagaaccaaaaacaggacaatgtaagaacaaatgtgatgccgactc 7935896  T
Q  621 ctctata---ccacaccccgacacgcataatgtgtttgtgacctgcgaaataccgcgcctttggaaattggtttttgttggtaacctgtctttcagcagt 717  Q
    |||||||   || |||||||| ||||| || |||||||| ||||| | |||  ||||||||||||  ||| |||| ||||||||||||||||| ||||      
T  7935897 ctctataccgccgcaccccgaaacgcacaaagtgtttgttacctgagcaatgtcgcgcctttggaggttgattttagttggtaacctgtcttttagcaac 7935996  T
Q  718 cgccacgc-acaatggaaactttcaagggaacctgctgatgccaaacaagattagttgtctcgtctagaactggggctgccatatatgttagaacatggt 816  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||| || | ||||| ||| |||   ||||||||||| ||||  ||  |||| |    
T  7935997 cgccacgcaacaatggaaactttcaagggaacctgctgatgccagacaaggttcgctgtcttgtcaagagtgggggctgccatgtatgccagtgcatgat 7936096  T
Q  817 aggcgtctctcactgtgtaatcgacatgattgttcggttcccatatccacccgtcagaaacattcagctgaacaataacattagtcaataaaattttaca 916  Q
    |||||||||| ||||||||  |  |||| || | | | ||||||  ||||| ||| |||||||| | ||| ||   ||||||||||||||| ||  ||||    
T  7936097 aggcgtctctgactgtgtatccagcatgtttttccagctcccattgccacctgtctgaaacatttaactgtaccgcaacattagtcaataagatcctaca 7936196  T
Q  917 ctc-tctaccaactccttcctcccacaccca 946  Q
    ||| ||||||| |||||| ||||||||||||    
T  7936197 ctcttctaccatctcctt-ctcccacaccca 7936226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 138 - 376
Target Start/End: Complemental strand, 13700798 - 13700559
Alignment:
Q  138 agaaatgaaaatgaaatattataacttcg-cgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaa-ctgtcacaaagta 235  Q
    |||||| |||||||||||| |||||| || |||||||||| |||||||||||||||||||||| || |||| |||   |||||||| |||||||||||||    
T  13700798 agaaatcaaaatgaaatataataactacggcgatgaaaacactttagtacaaggtgtactaaa-tgatccaacctgacaaaaacaaactgtcacaaagta 13700700  T
Q  236 taattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagcca 335  Q
    |||||| |||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||  ||||||||||    
T  13700699 taattacaagagaaagtcagtcgatacccaaacaatataaagggttcgaccaccaactttgagaaacgtacacaaaagtgattttgttaactttaagcca 13700600  T
Q  336 ccacaacgaatgaaatttaactttatctaacaactgctcaa 376  Q
    ||||||  |||||||||| ||||||||||||| ||||||||    
T  13700599 ccacaagaaatgaaattttactttatctaacagctgctcaa 13700559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 252 - 503
Target Start/End: Original strand, 21399966 - 21400217
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| | ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||    
T  21399966 tcagtcgacacccaaacaatgtagagggttcgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaat 21400065  T
Q  352 ttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaacacacaacaaccataata 451  Q
    |||||||||||||| | |||||||||||||||| | |||||||| |||| |||| |||||||||| ||||| | || ||| ||||| |  | ||||||||    
T  21400066 ttaactttatctaatagctgctcaataggtgtttcagtgtttttgaatagtctgttgtttcgttcgttccatatcatccacacacaaagaagccataata 21400165  T
Q  452 attgaagaaaagagcgacacgcctttgtataacctgaataatgaatgaattg 503  Q
    |||| | ||| || ||||  ||||||| ||||||||||||||| || |||||    
T  21400166 attgtaaaaatgatcgacgagcctttgaataacctgaataatggataaattg 21400217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 261 - 437
Target Start/End: Original strand, 47748755 - 47748931
Alignment:
Q  261 acccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaacttta 360  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  47748755 acccaaacaatgtagagggttcgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaatttaacttta 47748854  T
Q  361 tctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaacaca 437  Q
    | ||| |  || |||||||||||| | |||||||| || |||||| | |||||||| ||||||| || ||| |||||    
T  47748855 tttaatagttgttcaataggtgtttcagtgtttttgaacaatctgttatttcgttcgttccacaccatccacacaca 47748931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 252 - 437
Target Start/End: Original strand, 14306855 - 14307040
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||| || | || ||  |||| | |||||| ||| ||||| ||    
T  14306855 tcagtcgatacccaaacaaaataaagggttcgaccaccatctctgagaaccgtacacaaaattgatgttattagcttttaaccaccaaaacaaatgatat 14306954  T
Q  352 ttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaacaca 437  Q
    ||  |||| ||||| | |||   ||| || ||| || |||| || || || ||| |||| ||||||||||| | ||||||||||||    
T  14306955 tttgctttttctaatagctgtataatcggagttactatgttattgaacaacctgttgttacgttcattccaaatcaaccaaacaca 14307040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 259 - 364
Target Start/End: Original strand, 34829009 - 34829114
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 358  Q
    |||| ||||||  ||||||||||||||||||| ||||||||| |||||| ||||||||  || ||  ||||||||||||| || || |||||||||||||    
T  34829009 atactcaaacataataaagggttcgaccaccatctttgagaatcgtacataaaagtggccttattagctttaagccaccaaaaggagtgaaatttaactt 34829108  T
Q  359 tatcta 364  Q
    | ||||    
T  34829109 tttcta 34829114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 367
Target Start/End: Complemental strand, 46249414 - 46249299
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| ||||||||||||  |||||||| ||||||||| ||||| ||||||||||||||| |||| || ||  |||| | |||||| ||||||||| ||    
T  46249414 tcagtcgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccgtacacaaaattggtgttattaacttttaaccaccataacgaatgatat 46249315  T
Q  352 ttaactttatctaaca 367  Q
    ||  |||| |||||||    
T  46249314 tttgctttttctaaca 46249299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 252 - 365
Target Start/End: Complemental strand, 35216458 - 35216345
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| |||||||||||||  | ||||| | ||||||| || |||| ||||||||||||| |||  || ||  | ||||||||||| ||| ||||||||    
T  35216458 tcagtcgatacccaaacaatgcatagggtccaaccaccatctctgagtaccgtacacaaaattggcgttcttagccttaagccaccataacaaatgaaat 35216359  T
Q  352 ttaactttatctaa 365  Q
    |||||||| |||||    
T  35216358 ttaactttctctaa 35216345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 4963947 - 4964009
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagt 314  Q
    |||||| ||||||| ||||  |||||||| ||||||||| || ||||||||||||||||||||    
T  4963947 tcagtcgatacccagacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaagt 4964009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 353
Target Start/End: Complemental strand, 5790038 - 5789937
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||||||||||| ||||  |||||||| | ||||||| || | ||| ||||||||||||||||| || ||  |||| | |||||| ||| ||||||||    
T  5790038 tcagtcaatacccagacaaagtaaagggtccaaccaccatctctcagagccgtacacaaaagtggtgttattagcttttaaccaccaaaacaaatgaaat 5789939  T
Q  352 tt 353  Q
    ||    
T  5789938 tt 5789937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 15275474 - 15275533
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaa 311  Q
    |||||| ||||||||||| |||||||||| |||| ||||| | |||||||| ||||||||    
T  15275474 tcagtcgatacccaaacactataaagggtccgactaccaattatgagaaccatacacaaa 15275533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 137 - 487
Target Start/End: Original strand, 27096609 - 27096960
Alignment:
Q  137 gagaaatgaaaatgaaatattataacttcg-cgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaa-ctgtcacaaagt 234  Q
    ||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| || || | || ||||||||||| ||||||||||||    
T  27096609 gagaaatcaaaatgaaatattataactacggcgatggaaacgctttagtacaaggtgtactaaa-tgatctaacccagtaaaaacaaactgtcacaaagt 27096707  T
Q  235 ataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagcc 334  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27096708 ataattataagaaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttggctttaagcc 27096807  T
Q  335 accacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaac 434  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |  |||||| |||||||||||||||||| |||| ||||    
T  27096808 accacaacgaatgaaatttaactttatctaacaactgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacagcaactaaac 27096907  T
Q  435 acacaacaaccataataattgaagaaaagagcgacacgcctttgtataacctg 487  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  27096908 acacaacaatcataataattgaagaaaagagcggcaagcctttgtataacctg 27096960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 137 - 487
Target Start/End: Complemental strand, 27181694 - 27181343
Alignment:
Q  137 gagaaatgaaaatgaaatattataacttcg-cgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaa-ctgtcacaaagt 234  Q
    ||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| || || | || ||||||||||| ||||||||||||    
T  27181694 gagaaatcaaaatgaaatattataactacggcgatggaaacgctttagtacaaggtgtactaaa-tgatctaacccagtaaaaacaaactgtcacaaagt 27181596  T
Q  235 ataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagcc 334  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27181595 ataattataagaaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttggctttaagcc 27181496  T
Q  335 accacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaac 434  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |  |||||| |||||||||||||||||| |||| ||||    
T  27181495 accacaacgaatgaaatttaactttatctaacaactgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacagcaactaaac 27181396  T
Q  435 acacaacaaccataataattgaagaaaagagcgacacgcctttgtataacctg 487  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  27181395 acacaacaatcataataattgaagaaaagagcggcaagcctttgtataacctg 27181343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 252 - 437
Target Start/End: Complemental strand, 8723680 - 8723495
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgtt-gcctttaagccaccacaacgaatgaaa 350  Q
    |||||| ||||| | |||| |||||||||||||||| ||| | |||| ||||||||||||||||||||| || | |||||| ||||||||| |||||| |    
T  8723680 tcagtcgatacctagacaagataaagggttcgaccaacaattctgaggaccgtacacaaaagtggttttattggactttaa-ccaccacaaagaatgata 8723582  T
Q  351 tttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaacaca 437  Q
    ||| |||||  |||| | ||  |||||||||||| |  |||| || || |||||| |||||| |||||||||||  | |||||||||    
T  8723581 tttcacttttcctaagagcttatcaataggtgtttcaatgttattgaacaatctgttgtttctttcattccacactagccaaacaca 8723495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 367
Target Start/End: Complemental strand, 27724666 - 27724546
Alignment:
Q  247 aaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaat 346  Q
    |||| |||||| ||||||||||||  |||||| | ||||||||| |||||||||||||||| |||| |||| ||  |  |||| | |||||| |||||||    
T  27724666 aaaagtcagtcgatacccaaacaaagtaaaggatccgaccaccatctttgagaaccgtacataaaattggtgttactagcttttaaccaccataacgaat 27724567  T
Q  347 gaaatttaactttatctaaca 367  Q
    || ||||  |||| |||||||    
T  27724566 gatattttgctttttctaaca 27724546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 252 - 371
Target Start/End: Complemental strand, 44846334 - 44846215
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||||| |||||||||  |||| |||| | |||| || || |||||||||| |||||| ||||| || ||  ||||||  ||||| || |||||||||    
T  44846334 tcagtcaagacccaaacacaataaggggtccaaccatcatctctgagaaccgtgcacaaatgtggtattattagctttaaatcaccataaagaatgaaat 44846235  T
Q  352 ttaactttatctaacaactg 371  Q
    ||||||| |||||| |||||    
T  44846234 ttaacttgatctaataactg 44846215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 365
Target Start/End: Original strand, 34103062 - 34103175
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| ||||||||| ||  |||| ||| ||||||||| || || || ||| |||||||| |||  || ||| |||||||||| || ||||||||||||    
T  34103062 tcagtcgatacccaaataaagtaaatggtccgaccaccatctctgcgacccgcacacaaaattggcattattggctttaagccatcaaaacgaatgaaat 34103161  T
Q  352 ttaactttatctaa 365  Q
    ||||| || |||||    
T  34103162 ttaacattctctaa 34103175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 13845557 - 13845519
Alignment:
Q  333 ccaccacaacgaatgaaatttaactttatctaacaactg 371  Q
    |||||| || |||||||||||||||||||||||||||||    
T  13845557 ccaccaaaatgaatgaaatttaactttatctaacaactg 13845519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 136 - 431
Target Start/End: Original strand, 5287465 - 5287761
Alignment:
Q  136 ggagaaatgaaaatgaaatattataacttc-gcgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaactgtcacaaagt 234  Q
    |||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  5287465 ggagaaataaaaatgaaatattataacttcagtgatggaaacgctttagtacaaggtgtactaaaatgttccaccccggtaaagacaactgtcacaaagt 5287564  T
Q  235 ataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagcc 334  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  5287565 ataattacaaggaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagcc 5287664  T
Q  335 accacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaacca 431  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||| || || |||||| |||||| ||||||||||||||||||    
T  5287665 accacaacgaatgaaattttactttatcgaataactgctcaataggtgttgctatgttgttgaacaatctgttgtttctttcattccacaacaacca 5287761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 265 - 959
Target Start/End: Complemental strand, 40564101 - 40563407
Alignment:
Q  265 aaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatcta 364  Q
    ||||||| || | |||| ||||||||||||||||||| |||||||||| |||| || ||| ||||||||||||||||| |||| ||||||||||||| ||    
T  40564101 aaacaatgtagatggtttgaccaccaactttgagaactgtacacaaaaatggtattattggctttaagccaccacaacaaatggaatttaactttatata 40564002  T
Q  365 acaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaacacacaacaaccataataattgaagaaaaga 464  Q
    | |  ||||||||||||||| | |||||||| || | | || |||||||||| ||||||| || ||| ||||| |  | |||||||||||| | ||||||    
T  40564001 atagttgctcaataggtgtttcagtgtttttgaacagtttgttgtttcgttcgttccacaccatccacacacaaagaagccataataattgtaaaaaaga 40563902  T
Q  465 gcgacacgcctttgtataacctgaataatgaatgaattggtagaagtgctcactgacattatctgtatcaacaccaatcactccaatccaatatttgata 564  Q
     |||   ||||||| ||||||||||||||| || ||||| || || || |||| | |||| || || || ||||| | ||||||||||||  || | ||     
T  40563901 tcgatgagcctttgaataacctgaataatggataaattgataaaaatgatcacgggcattgtcagtgtcgacacccaacactccaatccacaatataatc 40563802  T
Q  565 agttgctatagagaaccaaatacatgacaatgtaagaacaagtgagaagccgactcctctataccacaccccgacacgcataatgtgtttgtgacctgcg 664  Q
     | ||| | |||||||||||  | |  ||||| |||||| | || || | |||||||||| |||||||||| || || || |   ||| ||||||||| |    
T  40563801 tgctgccaaagagaaccaaacgctttgcaatgaaagaacgaatgggatgtcgactcctctttaccacaccctgaaacacacataatgtctgtgacctgag 40563702  T
Q  665 aaataccgcgcctttggaaattggtttttgttggtaacctgtctttcagcagtcgccacgc-acaatggaaactttcaagggaacctgctgatgccaaac 763  Q
     || |||||||||||| | ||||  ||| ||||||||||||||||||||||   ||||||| |||||||||||||| || |||||||||| |||||| ||    
T  40563701 caacaccgcgcctttgaagattgaatttagttggtaacctgtctttcagcaactgccacgcaacaatggaaacttttaaaggaacctgcttatgccagac 40563602  T
Q  764 aagattagttgtctcgtctagaactggggctgccatatatgttagaacatggtaggcgtctctcactgtgtaatcgacatgattgttcggttcccatatc 863  Q
    ||| || | || | |||| |||   |||||||||||  |||||||| |||| || || || || |||||| |  || |||| ||||   | ||||||  |    
T  40563601 aaggttcgctgacgcgtcaagagtgggggctgccatggatgttagagcatgataagcatccctgactgtg-atccggcatgcttgtctagctcccattgc 40563503  T
Q  864 cacccgtcagaaacattcagctgaacaataacattagtcaataaaattttacactc-tctaccaactccttcctcccacacccacagacgtctcctc 959  Q
    ||||  |||||||||||   ||| |||| ||||||| ||||||||||| ||| ||| ||||| |||||| ||||||||| |||||| ||||||||||    
T  40563502 cacctatcagaaacattagactgcacaacaacattaatcaataaaattctactctcatctactaactcc-tcctcccacgcccacaaacgtctcctc 40563407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 48390920 - 48391035
Alignment:
Q  8 ggtcaagtcttatgtatgaagaaagtgagggaccgacatggttgggtttttgagtgacataatatgatttcaaagtttcaatgatggctgggggaaataa 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48390920 ggtcaagtcttatgtatgaagaaagtgagggaccaacatggttgggtttttgagtgacataatatgatttcaaagtttcaatgatggctaggggaaataa 48391019  T
Q  108 aatcatacatagttac 123  Q
    ||||||||||||||||    
T  48391020 aatcatacatagttac 48391035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 252 - 384
Target Start/End: Original strand, 18959771 - 18959903
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| ||||| | ||||  |||| ||| ||||||||| || | ||| | |||||||||||| ||||| ||| |||| | ||||||||| ||||||| |    
T  18959771 tcagtcgatacctagacaaagtaaaaggtccgaccaccagctcttagatctgtacacaaaagtagttttattggcttttaaccaccacaatgaatgaagt 18959870  T
Q  352 ttaactttatctaacaactgctcaataggtgtt 384  Q
    |||||||| ||||| | ||| | ||||||||||    
T  18959871 ttaactttttctaagagctgtttaataggtgtt 18959903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 28357471 - 28357574
Alignment:
Q  249 aaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatga 348  Q
    ||||||||| ||||||||||||| ||| ||||  ||||||||| | ||||||| |||||||||| |||| || |   |||| |||||||| || ||||||    
T  28357471 aaatcagtcgatacccaaacaatgtaaggggtctgaccaccaattatgagaactgtacacaaaaatggtgttatgagcttttagccaccataaagaatga 28357570  T
Q  349 aatt 352  Q
    ||||    
T  28357571 aatt 28357574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 13868365 - 13868265
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 358  Q
    |||||||||||  ||||||||| ||||||||| ||||| | |||||||| |||| |||  || ||  |||| ||||||||||| || ||| |||||||||    
T  13868365 atacccaaacataataaagggtccgaccaccatctttgtgtaccgtacataaaattggccttattagcttttagccaccacaaagagtgatatttaactt 13868266  T
Q  359 t 359  Q
    |    
T  13868265 t 13868265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 363
Target Start/End: Original strand, 33150585 - 33150689
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 358  Q
    ||||||| |||  ||||||| | ||||||||| ||||||| |||||||| |||| ||  ||||||  ||||||||||||| || || |||||| | ||||    
T  33150585 atacccagacataataaaggttccgaccaccatctttgagtaccgtacataaaattgactttgttagctttaagccaccataaagagtgaaatcttactt 33150684  T
Q  359 tatct 363  Q
    |||||    
T  33150685 tatct 33150689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 436 - 466
Target Start/End: Original strand, 5287751 - 5287781
Alignment:
Q  436 cacaacaaccataataattgaagaaaagagc 466  Q
    |||||||||||||||||||||||||||||||    
T  5287751 cacaacaaccataataattgaagaaaagagc 5287781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 49458320 - 49458377
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgg 316  Q
    |||||||||||||  | ||||| ||||||||| |||||| ||||||||||||| ||||    
T  49458320 atacccaaacaatgcatagggtccgaccaccacctttgataaccgtacacaaatgtgg 49458377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 8e-76; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 136 - 331
Target Start/End: Complemental strand, 374965 - 374769
Alignment:
Q  136 ggagaaatgaaaatgaaatattataacttc-gcgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaactgtcacaaagt 234  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | |||    
T  374965 ggagaaatgaaaatgaaatattataacttcagcgatggaaacgctttagtacaaggtgtactaaaatgttccaccccggtaaaaacaactgtcagagagt 374866  T
Q  235 ataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaa 331  Q
    ||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  374865 ataattacaaggaaaagtcagtcgatatccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaa 374769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 252 - 365
Target Start/End: Original strand, 379496 - 379609
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| |||||||||||||| ||||||| |||||||||||| |||| | ||||||||||| | |  || ||  | ||||||||||| ||||||||||||    
T  379496 tcagtcgatacccaaacaatacaaagggtccgaccaccaactctgagtatcgtacacaaaattagcgttcttagccttaagccaccataacgaatgaaat 379595  T
Q  352 ttaactttatctaa 365  Q
    |||||||| |||||    
T  379596 ttaactttctctaa 379609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 256 - 353
Target Start/End: Complemental strand, 14055192 - 14055095
Alignment:
Q  256 tcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaattt 353  Q
    ||||||||||||||| ||||||||| || |||||| ||||||||||| ||||||||| |||| || ||  |||| | |||||| ||||||||| ||||    
T  14055192 tcaatacccaaacaaaataaagggtccggccaccatctttgagaaccatacacaaaattggtgttattatctttcaaccaccaaaacgaatgatattt 14055095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 259 - 437
Target Start/End: Complemental strand, 35378704 - 35378527
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 358  Q
    ||||||| |||| ||||| |||||||||||||| | |||  |||||||||||||||| |||| ||| | || ||||| |||||  ||||| |||| ||||    
T  35378704 atacccagacaagataaacggttcgaccaccaattctgaataccgtacacaaaagtgattttattggcctttagccatcacaaaaaatgatatttcactt 35378605  T
Q  359 tatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaacaca 437  Q
    | ||||| |  || |||||||||||| |  || | || || ||||||  ||||| ||||||||||| || |||||||||    
T  35378604 tttctaagagttgatcaataggtgtttcaatg-tattgaacaatctgtagtttctttcattccacaccagccaaacaca 35378527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 13735445 - 13735380
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggt 317  Q
    ||||||||||||||||||   |||||||||||||||||| || | ||| |||||||||||||||||    
T  13735445 tcagtcaatacccaaacacagtaaagggttcgaccaccatctctaagagccgtacacaaaagtggt 13735380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 26904678 - 26904617
Alignment:
Q  250 aatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaa 311  Q
    |||||||| ||||||||||||| |||| ||| |||||||||||| |||||||| ||||||||    
T  26904678 aatcagtcgatacccaaacaatgtaaatggtccgaccaccaactctgagaaccatacacaaa 26904617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 364
Target Start/End: Complemental strand, 5909613 - 5909508
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 358  Q
    ||||||||||||   ||||||| ||||||||| || |||||| |||||||||||||||  || ||  |||| ||||||||  |||| |||||||| ||||    
T  5909613 atacccaaacaaatcaaagggtccgaccaccatctctgagaatcgtacacaaaagtggcgttatttgctttcagccaccaatacgagtgaaattttactt 5909514  T
Q  359 tatcta 364  Q
    | ||||    
T  5909513 tctcta 5909508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 16906942 - 16906981
Alignment:
Q  326 ctttaagccaccacaacgaatgaaatttaactttatctaa 365  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  16906942 ctttaagccaccaaaacgaatgaaatttaactttctctaa 16906981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 6e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 267 - 505
Target Start/End: Complemental strand, 12248086 - 12247849
Alignment:
Q  267 acaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatctaac 366  Q
    |||| |||||||| | |||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||     
T  12248086 acaaaataaagggctggaccaccaactttgggaaccgaacacaaaagtggttttattggctttaagccaccacaacgaatgaaatttaactttatctaag 12247987  T
Q  367 aactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaacacacaacaaccataataattgaagaaaagagc 466  Q
    | |||||||||||||||| | ||||| || || | |||| |||||||||||||||| | || |||||| || || || |  |||||||| |  || || |    
T  12247986 agctgctcaataggtgtttcagtgttattgaacagtctgttgtttcgttcattccataccagccaaacgca-aagaagccaaataattgtaagaatgaac 12247888  T
Q  467 gacacgcctttgtataacctgaataatgaatgaattggt 505  Q
    |||  ||||||| ||||||| |||||||||| |||||||    
T  12247887 gacgagcctttgaataacctaaataatgaataaattggt 12247849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 365
Target Start/End: Original strand, 15438752 - 15438865
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| ||||||||||||   | ||||| ||||||||| || | || | ||||||||||| |||| || ||  | ||||||||||| | ||||||||||    
T  15438752 tcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccaccaaagcgaatgaaat 15438851  T
Q  352 ttaactttatctaa 365  Q
    |||||||| |||||    
T  15438852 ttaactttctctaa 15438865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 365
Target Start/End: Original strand, 15530056 - 15530169
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| ||||||||||||   | ||||| ||||||||| || | || | ||||||||||| |||| || ||  | ||||||||||| | ||||||||||    
T  15530056 tcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccaccaaagcgaatgaaat 15530155  T
Q  352 ttaactttatctaa 365  Q
    |||||||| |||||    
T  15530156 ttaactttctctaa 15530169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 359
Target Start/End: Original strand, 9510379 - 9510486
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| |||||||||||  ||||||||| ||||||||| || |||| ||| | |||||||||||  || ||  ||||||||||||| || || |||||     
T  9510379 tcagtcgatacccaaacataataaagggtccgaccaccatctgtgagtaccctgcacaaaagtggccttattagctttaagccaccaaaaagagtgaaac 9510478  T
Q  352 ttaacttt 359  Q
    || |||||    
T  9510479 tttacttt 9510486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 6244732 - 6244794
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagt 314  Q
    |||||| |||||||||||  |||||||||  |||||||| || |||| |||||||||||||||    
T  6244732 tcagtcgatacccaaacataataaagggtctgaccaccatctgtgagtaccgtacacaaaagt 6244794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 252 - 620
Target Start/End: Original strand, 14497723 - 14498089
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||||||||||| |||| ||||||  |   ||||||| || |||||||||||||||||||||||||| |||  ||| | |||||||||||||||| ||    
T  14497723 tcagtcaatacccagacaaaataaagaatctaaccaccatctctgagaaccgtacacaaaagtggttttattggtttttaaccaccacaacgaatgatat 14497822  T
Q  352 ttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcattccacaacaaccaaacacacaacaaccataata 451  Q
     ||||||| ||||| |  ||||||||||||||| |  |||| || || ||||||  |||||||| |||||||| ||  |||||||| |  | ||| | ||    
T  14497823 gtaactttttctaaga--tgctcaataggtgtttcaatgttattgaacaatctgtggtttcgtttattccacatcagtcaaacacaaagaagccagatta 14497920  T
Q  452 attgaagaaaagagcgacacgcctttgtataacctgaataatgaatgaattggtagaagtgctcactgacattatctgtatcaacaccaatcactccaat 551  Q
    |||| |  || || ||||  ||||||| || ||||| ||||||||| |||||||  || ||||||||   ||| || ||||| || |||  ||| |||||    
T  14497921 attgtaagaacgatcgacgagcctttgaatgacctgtataatgaataaattggtgaaaatgctcactagtattttcagtatcgactccagacacgccaat 14498020  T
Q  552 ccaatatttgataagttgctatagagaaccaaatacatgacaatgtaagaacaagtgagaagccgactc 620  Q
    |||| | |||||| | ||||| ||  ||||||| |||| |||||| | |||||| || |||||||||||    
T  14498021 ccaagacttgatatgatgctaaagcaaaccaaaaacatcacaatgaaggaacaaatgggaagccgactc 14498089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 252 - 365
Target Start/End: Original strand, 31706354 - 31706467
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||| |||| |||||||  |||| ||| ||||||||| || ||||| ||| ||||||| ||||  || ||  |||| |||||||| |||||||| |||    
T  31706354 tcagtcgatactcaaacaaattaaaaggtccgaccaccatctctgagagccgcacacaaacgtggcattattagcttttagccaccataacgaatggaat 31706453  T
Q  352 ttaactttatctaa 365  Q
    ||||||||||||||    
T  31706454 ttaactttatctaa 31706467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 33095576 - 33095618
Alignment:
Q  274 aaagggttcgaccaccaactttgagaaccgtacacaaaagtgg 316  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  33095576 aaagggtccgaccaccatctttgagaaccgtacacaaaagtgg 33095618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 29977577 - 29977513
Alignment:
Q  247 aaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaa 311  Q
    ||||||||||| || |||||||| ||||||| || |||||||||| | |||||||| ||||||||    
T  29977577 aaaaatcagtcgattcccaaacactataaagagtccgaccaccaattgtgagaaccatacacaaa 29977513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 371
Target Start/End: Original strand, 21685 - 21804
Alignment:
Q  252 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 351  Q
    |||||||| |||||||||  |||| |||| ||||||||| || |||||||||| |||||| ||||  || ||  ||||||||||||| |  |||||||||    
T  21685 tcagtcaagacccaaacacaataaggggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaat 21784  T
Q  352 ttaactttatctaacaactg 371  Q
    ||||||| |||||| |||||    
T  21785 ttaacttgatctaataactg 21804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 247 - 365
Target Start/End: Complemental strand, 17736 - 17618
Alignment:
Q  247 aaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaat 346  Q
    |||| |||||| |||||||||||||  ||||||| |||||||||||| |||| ||||||||||||| |    || ||  | ||||||||||| |||||||    
T  17736 aaaagtcagtcgatacccaaacaatgcaaagggtccgaccaccaactctgagtaccgtacacaaaaataacgttcttagccttaagccaccataacgaat 17637  T
Q  347 gaaatttaactttatctaa 365  Q
     |||||||||||| |||||    
T  17636 aaaatttaactttctctaa 17618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 251 - 365
Target Start/End: Complemental strand, 51012 - 50898
Alignment:
Q  251 atcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaa 350  Q
    ||||||||| |||||| |||| |||||| | ||||||||| || |||||||| |||||||| ||||  |||||  | ||||||||||| || ||||||||    
T  51012 atcagtcaagacccaagcaatgtaaaggatccgaccaccatctctgagaaccttacacaaatgtggccttgtttgccttaagccaccataaagaatgaaa 50913  T
Q  351 tttaactttatctaa 365  Q
    |||| | ||||||||    
T  50912 tttagcattatctaa 50898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 251 - 365
Target Start/End: Complemental strand, 64307 - 64193
Alignment:
Q  251 atcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaa 350  Q
    ||||||||| ||||||||||  |||||| | |||||| || || ||||||||||||||||| ||||  || ||  | ||||||||||| || ||||||||    
T  64307 atcagtcaagacccaaacaaagtaaaggatccgaccatcatctctgagaaccgtacacaaatgtggcattatttgccttaagccaccataaagaatgaaa 64208  T
Q  351 tttaactttatctaa 365  Q
    |||| | ||||||||    
T  64207 tttagcattatctaa 64193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 7258 - 7315
Alignment:
Q  259 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgg 316  Q
    ||||||||||||   | ||||||||||||||| |||||| ||||||||||||| ||||    
T  7258 atacccaaacaaagcatagggttcgaccaccacctttgataaccgtacacaaatgtgg 7315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University