View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4988_high_1 (Length: 441)
Name: NF4988_high_1
Description: NF4988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4988_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 34077676 - 34078091
Alignment:
| Q |
18 |
caatcaccattctattagggccaaccactacatcaagctcttcttggattttgtgaaggacgtgtggatgtttgattacctctgtcatcgcccattcatt |
117 |
Q |
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| T |
34077676 |
caatcaccattctattagggccaaccactacatcaagctcttcttggattttgtgaagaacgtgtggatgtttgattacctctgtcatcgcccattcatt |
34077775 |
T |
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| Q |
118 |
agtaacggctgaagtgtccgttgcagccgcgatcatgtcctaaatatttagtataactacattattttcaatcattacatgaaaaattaaacaaaattaa |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34077776 |
agtaacggctgaagtgtctgttgcagccgcgatcatgtcctaaatatttagtataactacattattttcaatcattacatgaaaaattaaacaaaattaa |
34077875 |
T |
|
| Q |
218 |
tagagaaaaagtcatacctgaatcaaagcttttatctcaacatcatccatatgctcttttccatcttcaccaggcaaagacaataaaatatccacaaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34077876 |
tagagaaaaagtcatacctgaatcaaagcttttatctcaacatcatccatatgctcttttccatcttcaccaggcaaagacaataaaatatccacaaaat |
34077975 |
T |
|
| Q |
318 |
caagttcttcatcactttttcctatccctttcttatctttccttgcctttctatgttcttcaagaattttggagtgaaagtcatcaactcttttttctac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34077976 |
caagttcttcatcactttttcctatccctttcttatctttccttgcctttctatgttcttcaagaattttggagtgaaagtcatcaactcttttttctac |
34078075 |
T |
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| Q |
418 |
ttccctcattttcttc |
433 |
Q |
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| T |
34078076 |
ttccctcattttcttc |
34078091 |
T |
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