View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4988_high_3 (Length: 334)
Name: NF4988_high_3
Description: NF4988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4988_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 330
Target Start/End: Original strand, 15169489 - 15169816
Alignment:
| Q |
6 |
atgagaggagtgaagggaatcaatgttgccctcaatgcaacagtcgctataagcgccataaagggtagcctttagtgaaactttttgttatcatagt--- |
102 |
Q |
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| T |
15169489 |
atgagaggagtgaagggaatcaatgttgccctcaatgcaacagtcgctataagcgccataaaggttagcctttagtgaaactttttgttatcgtagtagt |
15169588 |
T |
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| Q |
103 |
aactttaatttatatgtgtagaaaagttttacacatacattcaatcagatcttactattcagatataccataatgttattttctaaaatacttgcactag |
202 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169589 |
aactttaatttatatgcgtagaaaagttttacacatacattcaatcagatcttactattcagatataccataatgttattttctaaaatacttgcactag |
15169688 |
T |
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| Q |
203 |
taagtagtgaaatgtgattggatatagaaaacgtatttgttgaagtaactatgtcgcgcagtttttaatctcagccatccaatctgattcagtatttaaa |
302 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169689 |
taaatagtgaaatgtgattggatatagaaaacgtatttgttgaagtaactatgtcgcgcagtttttaatctcagccatccaatctgattcagtatttaaa |
15169788 |
T |
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| Q |
303 |
actgattttgataatgatgatgatgatg |
330 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
15169789 |
actgattttgataatgatgatgatgatg |
15169816 |
T |
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