View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4988_low_1 (Length: 712)
Name: NF4988_low_1
Description: NF4988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4988_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 321 - 670
Target Start/End: Original strand, 3904264 - 3904613
Alignment:
| Q |
321 |
ataatcgtgatgtgcattggaaagatatttgtacttaagaattcgaaaaataaatgatatttatattcaaaaagaattgctaagaaattttcattatatc |
420 |
Q |
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| T |
3904264 |
ataatcgtgatgtgcattggaaagatatttgtatttaagaattcaaaaaataaatgatatttatatttaaaaagaattgctaataaattttcattatatc |
3904363 |
T |
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| Q |
421 |
agcttgtgtatttattttggttttctatttatgtggctgtaaatattagatatattcgcttatgtatatcaatttattttggttagttacttaggtttta |
520 |
Q |
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| T |
3904364 |
agcttttatatttattttagtttgctatttatgtggctgtaaatattagatacattcgcttatgtatatcaatttattttggttagttacttaggtttta |
3904463 |
T |
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| Q |
521 |
tcaatggaacgtcgaaacgtctcgtgttatatagtatcaagcagtctcattccaatttcttttgcttaacaaaatatagcatattaaaaagcattaggga |
620 |
Q |
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| T |
3904464 |
tcaatagaacgtcgaaacgtctcgtgttatatagtatcaagcagtctcattccaatttcttttgcttaacaaaatatagcatattaaaaagcattaggga |
3904563 |
T |
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| Q |
621 |
tctcatggggtgaatctcaattgatttcaacatttagtggttggatttgg |
670 |
Q |
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| T |
3904564 |
tctcatgggttgaatgtcaattgatttcaacattcagtggttggaattgg |
3904613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 3903809 - 3904107
Alignment:
| Q |
19 |
attatgtgtgcagaggtacgagcagatatttgtagaaagcgcagtaaaacatggggagatccttgtttttcctctgaaaactgtaatagatattgcatca |
118 |
Q |
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| T |
3903809 |
attatgtgtgcagaggtacaagcagatatttgtagaaagcgcagtaaaacatggggagatccttgttttacctctgaaaactgtaatagatattgcatca |
3903908 |
T |
|
| Q |
119 |
aatctgaaaacggagttggcgggatttgcatgtctgatggcattggatttacttgcttctgtgaattcatctgctgagctaatcatcaacactaaatttc |
218 |
Q |
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| T |
3903909 |
aatctgaaaatggagttggcgggatttgcatgtctgatggcattggatttacttgcttctgtgaattcatctgctgagcaaatcatcaacactaaatttc |
3904008 |
T |
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| Q |
219 |
tgttcaagcaatgtgatatttatttctaaagtataataataaatcatgggaagaaaatgttttattttctctcctgtacctgttttaaacaaacttata |
317 |
Q |
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| T |
3904009 |
tgttcaagcaatgtgacatttatttctaaagtataataataaattatgggaagaaaatgttttattttctctcttgtacctgttttaaacaaacttata |
3904107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 102 - 358
Target Start/End: Original strand, 3906729 - 3906997
Alignment:
| Q |
102 |
taatagatattgcatcaaatctgaaaacggagttggcgggatttgcatgtctgatggcattggatttacttgcttctgtgaattcatctgctgagctaat |
201 |
Q |
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| T |
3906729 |
taatagatattgcatcggctctgaacacggagttggtgggacttgcatgcctgatggccttggatttgcttgcttctgtgaattcatctgctgaacaaat |
3906828 |
T |
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| Q |
202 |
catcaacactaaatttctgttc-aagcaatgtgatatttatttctaaagt-------ataataataaatcatgggaagaaaatgttttattttctctcct |
293 |
Q |
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| T |
3906829 |
catcaacactaaatttttgttcaaatcaatgtgatttctatttctaaagtataataaataataatagatcataggaaggaaatgttctattttctttctt |
3906928 |
T |
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| Q |
294 |
gtacctgttttaaacaaacttat----ataaataatcgtgatgtgcattggaaagatatttgtacttaa |
358 |
Q |
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| T |
3906929 |
gtacctgttttacacaaacttatatcaataaataatcgtgatgtgcatgggaaagatatttgtatttaa |
3906997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 454 - 603
Target Start/End: Original strand, 3907561 - 3907711
Alignment:
| Q |
454 |
tggctgtaaatattagatatattcgcttatgtatatcaatttattttggttagttacttaggttttatcaatggaacgtcgaaacgtctcgtgttata-t |
552 |
Q |
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| T |
3907561 |
tggctgtaaattttagatagattcgcttatgtatatcaatttatttgggttagttacttaggttttat-tttgggacgtcgaaacgtctcattttatagt |
3907659 |
T |
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| Q |
553 |
agtatcaagcagtctcattcc-aatttcttttgcttaacaaaatatagcata |
603 |
Q |
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| T |
3907660 |
agtatcaagcaatctcattccaaattttttttgcttaacaaaatatagcata |
3907711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 3906983 - 3907021
Alignment:
| Q |
376 |
gatatttatattcaaaaagaattgctaagaaattttcat |
414 |
Q |
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| T |
3906983 |
gatatttgtatttaaaaagaattgctaagaaattttcat |
3907021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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