View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4988_low_3 (Length: 387)
Name: NF4988_low_3
Description: NF4988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4988_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 40517944 - 40518300
Alignment:
| Q |
11 |
taatactaaatatcacatttactaacgtctgatcaaatctcgtgtttaaccaagctagctctgctggaaggaaattcaccaaaaagagtagtaaagtttt |
110 |
Q |
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| T |
40517944 |
taatactaaatatcacatttactaacgtctgatcaaatctcgtgtttaaccaagctagctctgctggaaggaaattcaccaaaaagagtagtaaagtttt |
40518043 |
T |
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| Q |
111 |
ttctgttctctacttttcactaaattatcattaaattggtataccatataatatatcattggaatccctatattattggcctgcgttcactgtggcatac |
210 |
Q |
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| T |
40518044 |
ttttgttctctacttttcactaaattatcattaaattggtataccatataatatatcattggaatccctatattattggcctgcgttcactgtggcatac |
40518143 |
T |
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| Q |
211 |
attgaatgcatcaaagcgacatgtctgagaaataacaccatacatatatacaatgagaatgagttgcaccaacctttataacaaaaattgaatttggttg |
310 |
Q |
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| T |
40518144 |
attgaatgcatcaaagcgacatgtctgagaaataacaccatacatat-tacaatgagaatgagttgcaccaacctttataacaaaaattgaatttggttg |
40518242 |
T |
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| Q |
311 |
tatttactatttgatcagaaaataattacaaattgaactatacacttcacgagcacat |
368 |
Q |
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| T |
40518243 |
tatttactatttgatcagaaaataattacaaattgaactatacacttcacgagcacat |
40518300 |
T |
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Back To:
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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 34464625 - 34464710
Alignment:
| Q |
161 |
atatatcattggaatccctatattattggcctgcgttcactgtggcatacattgaatgcatcaaagcgacatgtctgagaaataac |
246 |
Q |
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| T |
34464625 |
atatatcattggaatccctatattattggcatgtgttcactgtgggatgcattgaaagcatcaaagcgacttgtctgcgaaataac |
34464710 |
T |
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