View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4988_low_4 (Length: 367)
Name: NF4988_low_4
Description: NF4988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4988_low_4 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 10070 - 9717
Alignment:
| Q |
8 |
atattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10070 |
atattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagac-gtgggtgggtataggaaat |
9972 |
T |
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| Q |
108 |
ttgttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatat |
207 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9971 |
ttgttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatat |
9872 |
T |
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| Q |
208 |
ctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9871 |
ctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagt |
9772 |
T |
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| Q |
308 |
tccagtgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9771 |
tccagtgctacgccttcaaccactcggccatctctcctacataatgattatgtcc |
9717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 18181065 - 18180712
Alignment:
| Q |
8 |
atattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18181065 |
atattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagac-gtgggtgggtataggaaat |
18180967 |
T |
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| Q |
108 |
ttgttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatat |
207 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180966 |
ttgttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatat |
18180867 |
T |
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| Q |
208 |
ctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagt |
307 |
Q |
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| T |
18180866 |
ctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagt |
18180767 |
T |
|
| Q |
308 |
tccagtgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18180766 |
tccagtgctacgccttcaaccactcggccatctctcctacataatgattatgtcc |
18180712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 113 - 362
Target Start/End: Complemental strand, 37189616 - 37189370
Alignment:
| Q |
113 |
attccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatctatt |
212 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37189616 |
attccttgcccactttattccactattttttttattacagaaaacagaaataaattaggaatagagaattcacatcaaagttggaataatgatatctatt |
37189517 |
T |
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| Q |
213 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189516 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagag---ttcgaaccctcggtaaacaaaaagcctacatagcagttccag |
37189420 |
T |
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| Q |
313 |
tgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc |
362 |
Q |
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| || | |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37189419 |
tactgcaccttcaaccactcggccatctctcctacataatgattatgtcc |
37189370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 244912 - 244818
Alignment:
| Q |
257 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||| |
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| T |
244912 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccaatgctacgccttgaaccgctcggccatctttcctacataa |
244818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 285
Target Start/End: Original strand, 207782 - 207817
Alignment:
| Q |
250 |
aagggtgcggaaagagagggattcgaaccctcggta |
285 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
207782 |
aagggagcggaaagagagggattcgaaccctcggta |
207817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 27029783 - 27029873
Alignment:
| Q |
269 |
gattcgaaccctcggtaaacaaaaa----gcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgat |
355 |
Q |
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||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27029783 |
gattcgaaccctcggtaaaaaaaaaaaaagcttacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgat |
27029873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 42790 - 42818
Alignment:
| Q |
257 |
cggaaagagagggattcgaaccctcggta |
285 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42790 |
cggaaagagagggattcgaaccctcggta |
42818 |
T |
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