View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4989-Insertion-2 (Length: 980)
Name: NF4989-Insertion-2
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 619; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 8 - 873
Target Start/End: Complemental strand, 50538295 - 50537414
Alignment:
| Q |
8 |
agcagcacgcaatagaaccggggataggtgggtgtgttggccttcatagctggttagcacgatcgaagagtctgcagccgaacgctctatacgcttcttc |
107 |
Q |
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| T |
50538295 |
agcagcacgcaatagaaccggggataggtggatgtgatggccttcatagctggttagcacgatcgaagagtctgcagccgaacgctctatacgcttcttc |
50538196 |
T |
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| Q |
108 |
acctcacagctcccagcggtgcaacggtaatagctcctattttgcatcacacaagatnnnnnnnnn--tgtaagccaaattggagagtatgtgtttatgc |
205 |
Q |
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| T |
50538195 |
acctcacagttcccggcggtgcaacggtaatagctcctattttgcatcacacaagataaaaaaaaaaatgtaagccaaattggagagtatgtgt--atgc |
50538098 |
T |
|
| Q |
206 |
tatagttacaaatatatagtctaaatggaataaaaaattaagcttgatttttagacaaagccttcaaatcttagtgcaagggaatcaaatgcatctactt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50538097 |
tatagttacaaatatatagtctaaatggaataaaaaattaagtttgatttttagacaaagccttcaaatcttagtgcaagggaatcaaatgcatctactt |
50537998 |
T |
|
| Q |
306 |
ttgcactcagatctaaaggctatgcaatagtatcttgatttgatggtacatgtatgtat------------atacctgggaaatgggctgtttttgactg |
393 |
Q |
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| T |
50537997 |
ttgcactcagatctaaaggctatgcaatagtatcttgatttgatggtacatgtatgtatgtatgtatgtatatacctgggaaatgggctgtttttgactg |
50537898 |
T |
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| Q |
394 |
gtttttggccatacttgcgccacctataaccatcatccaagtgatcaatatcactctttgtcttgaaagtaactcttgctggtcgtagcttcttgttc-- |
491 |
Q |
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| T |
50537897 |
gtttttggccatacttgcgccacctataaccatcatccaagtgatcaacatcactctttgtcttgaaagtaactcttgctggtcgtagcttcttgttctt |
50537798 |
T |
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| Q |
492 |
-ttcttcttctttggcttcaacctataacaccagtttcagctttattcagtaaatcaaatcaatattttaatgnnnnnnnctattacttttcttattgtc |
590 |
Q |
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| T |
50537797 |
gttcttcttctttggcttcaacctataacaccagtttcagctttattcagtaaatcaaatcaatattttaatgtttttttctattacttttcttattgtc |
50537698 |
T |
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| Q |
591 |
aaactagcatacattaaacaaaagtaaataaa-----------acatggaaatgacactgacaacagtgaataacccggaaagcccgctcaaagtaattg |
679 |
Q |
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| T |
50537697 |
aaactagcatacattaaacaaaagtaaacaaaacggcaagaacacatggaaatgacactgacaacagtgaataacccggaaagcccgctcaaagtaattg |
50537598 |
T |
|
| Q |
680 |
aatacacagacacacacaaaaaacatacatcaccttcaacttcctcgtcttcatttggaactgctgtttcttttttctctttttagtcaattacaatttt |
779 |
Q |
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| T |
50537597 |
aatacacagacacacacaaaaaacatacatcatcttcaacttcctcgtcttcatttggaactgctgtttcttttttctctttttagtcaattacaatttt |
50537498 |
T |
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| Q |
780 |
taattaatnnnnnnnnnnnnnnnnntgatatttttaatcaactcactgtttcttcatctgatcttggatcattttgattctctaacaagtctga |
873 |
Q |
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| T |
50537497 |
taattaat-------aaaataaaaatgata-ttttaatcaactcactgtttcttcatctgatctt-gatcattttgattctct-acaagtctga |
50537414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 366 - 462
Target Start/End: Original strand, 12869119 - 12869215
Alignment:
| Q |
366 |
tacctgggaaatgggctgtttttgactggtttttggccatacttgcgccacctataaccatcatccaagtgatcaatatcactctttgtcttgaaag |
462 |
Q |
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| T |
12869119 |
tacctgggaaaaggactgtttttcacagctttttggccatatttacgccacctatagccatcatctaggtgatcaacttcactctttgtcatgaaag |
12869215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 462
Target Start/End: Complemental strand, 12557739 - 12557658
Alignment:
| Q |
381 |
ctgtttttgactggtttttggccatacttgcgccacctataaccatcatccaagtgatcaatatcactctttgtcttgaaag |
462 |
Q |
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| T |
12557739 |
ctgtttttcacagctttttggccatatttacgccacctataaccatcatctaggtgatcaacttcactctttgtcatgaaag |
12557658 |
T |
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