View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4989-Insertion-4 (Length: 586)
Name: NF4989-Insertion-4
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 7 - 586
Target Start/End: Original strand, 48273480 - 48274056
Alignment:
| Q |
7 |
aaattctacctgttgattactttgtaggatcatcttatgttaattgttaccaggcttcccataatgagtagtagacaattattgcgtatgcttatttttg |
106 |
Q |
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| T |
48273480 |
aaattctacctgttgattactttgtaggatcatcttatgttaattgttaccaggcttcccataatgagtagtagacaatt---gcgtatgcttatttttg |
48273576 |
T |
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| Q |
107 |
gaaaattctttggaatgcttctctctagtgtcctttggtgattgaaccatgacacagcctttaattcccttcctgttctttttacgaaggaatttataat |
206 |
Q |
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| T |
48273577 |
gaaaattctttggaatgcttctctctagtgtcctttggtgattgaacaatgacacagcctttaattcgcttcctgttctttttacgaaggaattgataat |
48273676 |
T |
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| Q |
207 |
ttgctcttaactagtgtagcatcttatttagtttactggagcttcatacaagaatcttttgctagtcaaatatttgttatgttgtttttgtttgccatcc |
306 |
Q |
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| T |
48273677 |
ttgctcttgactagtgtagcatcttatttagtttactggagcttcatacaagaatcttttgctagtcaaatctttgttatgttgtttttgtttgccatcc |
48273776 |
T |
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| Q |
307 |
aaccttacatatgtttcattgttttagttgttataaacttgcaaacttttcattacttgtcataagtaagaagtgtttgtggtccaattgagattgactg |
406 |
Q |
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| T |
48273777 |
aaccttacatatgtttcatcgttttagttgttataaacttgcaaacttttcattacttgtcttaagtaagaagtgtttgtggtccaattgagattgactg |
48273876 |
T |
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| Q |
407 |
taagacataggaggtagaaaccccagctaaaccattcagtttctataatttgaaaaccagctgcgttggttaatgtttatatcaaagcaattcaaactta |
506 |
Q |
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| T |
48273877 |
taagacataggaggtagaaaccccagctaaaccattcagtttctataatttgaaaaccagctgcattggttaatgtttatatcaaagcaattcaaactta |
48273976 |
T |
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| Q |
507 |
ttttggatttgattggactgtttgattgtgtttttagcttagaatggtacataaaaaacctaagcctattttgtatagag |
586 |
Q |
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| T |
48273977 |
ttttggatttgattggactgtttgattgtgtttttagcttagaatggtacataaaaaacctaagcctattttgtatagag |
48274056 |
T |
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