View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4989-Insertion-5 (Length: 512)
Name: NF4989-Insertion-5
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989-Insertion-5 |
 | |
|
| [»] chr4 (10 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 7 - 512
Target Start/End: Original strand, 48884678 - 48885181
Alignment:
| Q |
7 |
aaacaatgttagtggaccatagatatcaattatgcaagttattatgttacttccgagccataagttgagatagtagagtaattctctgatgacaatgtta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48884678 |
aaacaatgttagtggaccatagatatcaattatgcaagttattatgttacatccgagccataagttgagatagtagagtaattctctgatgacaatgtta |
48884777 |
T |
|
| Q |
107 |
tgattttgtttttgtcaggggaaattatgtaaaactatagcatgttaatttagttagacttttgggttactgcacaaaaaggaacgagaagcttctaatc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48884778 |
tgattttgtttttgtcaggggaaattatgtaaaactacagcatgttaatttagttagacttttgggttactgcacaaaaaggaacgagaagcttctaatc |
48884877 |
T |
|
| Q |
207 |
tatgaatacctcccaaataaaagcttagatcattatctcattggtctgtaacattacttgtccctattaagttttcttctcaaagaaataggaaattaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48884878 |
tatgaatacctcccaaataaaagcttagatcattatctcattggtttgtaacattacttgtccctattaagttttcttctcaaagaaataggaaattaat |
48884977 |
T |
|
| Q |
307 |
tttttatttgctactaagctcaattaatcttcaaagcagcaacaattccagaatatacttttttagtgactgatagttgagaattgaatttaatgcagat |
406 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48884978 |
tttttatttgttactaagctcaattaatcttcaaagcagcaataattccagaatatacttttttagtgactaatagttgagaattgaatttaatgcagat |
48885077 |
T |
|
| Q |
407 |
ccaaggaaatcaaatcttctagattggaccaagcgtgtgaatatcattgaagaaaattactcaaggccttctttatctccaagagtactcagagttttac |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
48885078 |
ccaaggaaatcaaatcttctagattggaccaagcgtgtgaatatcattgaag-ggattactcaaggccttctttatctccaagagtactca-aattttac |
48885175 |
T |
|
| Q |
507 |
tataat |
512 |
Q |
| |
|
|||||| |
|
|
| T |
48885176 |
tataat |
48885181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 137 - 512
Target Start/End: Complemental strand, 48477160 - 48476779
Alignment:
| Q |
137 |
aaaactatagcatgttaatttagttagacttttgggttactgcacaaaaaggaacgagaagcttctaatctatgaatacctcccaaataaaagcttagat |
236 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48477160 |
aaaactacagcatgttaatttagttagacttttgggttactgcacaaaaaggaacgagaagcttctaatctatgaatacctcccaaataaaagcttagac |
48477061 |
T |
|
| Q |
237 |
cattatctcattggtctgtaacattacttgtccctattaagttttcttctc-aaagaaataggaaattaattttttatttgctactaagctcaattaatc |
335 |
Q |
| |
|
|||| |||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48477060 |
cattttctcattggtttgtaacattacttgcccctattaagttttcttctcaaaaaaaataggaaattaattttttatttgctactaagctcaattaatc |
48476961 |
T |
|
| Q |
336 |
ttcaaagcagcaacaattccagaatatac-----ttttttagtgac---tgatagttgagaattgaatttaatgcagatccaaggaaatcaaatcttcta |
427 |
Q |
| |
|
||| ||| ||||| ||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
48476960 |
ttc-aagtagcaataattccagaatatacatttaatttttagtgactaataatagttgagaattgaacttaatgcagatccaaggaaatcaattcttcta |
48476862 |
T |
|
| Q |
428 |
gattggaccaagcgtgtgaatatcattgaagaaaattactcaaggccttctttatctccaagagtactcagagttttactataat |
512 |
Q |
| |
|
||||||| | || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
48476861 |
gattggaggagacgcgtgaatatcattgaag-gaataactcaaggccttctttatctccaagagtactca-aattttactataat |
48476779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 147 - 512
Target Start/End: Complemental strand, 48468288 - 48467913
Alignment:
| Q |
147 |
catgttaatttagttagacttttgggttactgcacaaaaaggaacgagaagcttctaatctatgaatacctcccaaataaaagcttagatcattatctca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48468288 |
catgttaatttagttagacttttgggttactgcacaaaaaggaacgagaagcttctaatctatgaatacctcccaaataaaagcttagatcattttctca |
48468189 |
T |
|
| Q |
247 |
ttggtctgtaacattacttgtccctattaagtttt-----cttctcaaagaaataggaaattaattttttatttgctactaagctcaattaatcttcaaa |
341 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48468188 |
ttggtttgtaacattacttgtccctattaagtttagtttccttctcaaagaaataggaaattaattttttatttgctactaagctcaattaatcttc-aa |
48468090 |
T |
|
| Q |
342 |
gcagcaacaattccagaatatac-----ttttttagtgac---tgatagttgagaattgaatttaatgcagatccaaggaaatcaaatcttctagattgg |
433 |
Q |
| |
|
| ||||| ||||||||||||||| ||||||||||| | ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48468089 |
gtagcaataattccagaatatacatttaatttttagtgactattaatagttgtgaattgaacttaatgcagatccaaggaaatcaattcttctagattgg |
48467990 |
T |
|
| Q |
434 |
accaagcgtgtgaatatcattgaagaaaattactcaaggccttctttatctccaagagtactcagagttttactataat |
512 |
Q |
| |
|
| | ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
48467989 |
aagagacgtgtgaatatcattgaag-ggatcactcaaggccttctttatctccaagagtactca-aattttactataat |
48467913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 48484464 - 48484356
Alignment:
| Q |
147 |
catgttaatttagttagacttttgggttactgcacaaaaaggaacgagaagcttctaatctatgaatacctcccaaataaaagcttagatcattatctca |
246 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48484464 |
catgtgaatttagttagacttttgggttactgcacaaaaaggaacgagaagcttctgatctatgaatacctcccaaataaaagcttagatcattttctct |
48484365 |
T |
|
| Q |
247 |
ttggtctgt |
255 |
Q |
| |
|
||||||||| |
|
|
| T |
48484364 |
ttggtctgt |
48484356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 48477379 - 48477249
Alignment:
| Q |
7 |
aaacaatgttagtggaccatagatatcaattatgcaagttattatgttacttccgagccataagttgaga---tagtagagtaattctctgatgacaatg |
103 |
Q |
| |
|
||||||| ||| ||| ||||| | ||||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
48477379 |
aaacaatattaatgggccataaacatcaagtatgcaagttcttatgttacatccgagccataagttgagagtatagtagagtaattctcagatgacaatg |
48477280 |
T |
|
| Q |
104 |
ttatgattttgtttttgtcaggggaaattat |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48477279 |
ttatgattttgtttttgtcaggggaaattat |
48477249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 387 - 512
Target Start/End: Complemental strand, 48484217 - 48484094
Alignment:
| Q |
387 |
gaattgaatttaatgcagatccaaggaaatcaaatcttctagattggaccaagcgtgtgaatatcattgaagaaaattactcaaggccttctttatctcc |
486 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48484217 |
gaattgaacttaatgcagatccaaggaaatcaattcttctagattggcgtaaacgtgtgaatgtcattgaag-gaattactcaaggccttctttatctcc |
48484119 |
T |
|
| Q |
487 |
aagagtactcagagttttactataat |
512 |
Q |
| |
|
||||||||||| | |||||||||||| |
|
|
| T |
48484118 |
aagagtactca-aattttactataat |
48484094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 48468504 - 48468383
Alignment:
| Q |
19 |
tggaccatagatatcaattatgcaagttattatgttacttccgagccataagttgaga---tagtagagtaattctctgatgacaatgttatgattttgt |
115 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||| || | |
|
|
| T |
48468504 |
tggaccataaatatcaagtatgcaagttattatgttacatccgttccacaagttgagagtatagtagagtaattctctgatgacaatgttatgacctt-t |
48468406 |
T |
|
| Q |
116 |
ttttgtcaggggaaattatgtaa |
138 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
48468405 |
ttttgtcaggggaaattaggtaa |
48468383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 48484615 - 48484564
Alignment:
| Q |
82 |
gagtaattctctgatgacaatgttatgattttgtttttgtcaggggaaatta |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
48484615 |
gagtaattctctgatgacaatgttatgatttaatttttgccagggaaaatta |
48484564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 512
Target Start/End: Original strand, 48869449 - 48869495
Alignment:
| Q |
465 |
actcaaggccttctttatctccaagagtactcagagttttactataat |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
48869449 |
actcaaggccttctttatctccaagagtactca-aattttactataat |
48869495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 48484352 - 48484314
Alignment:
| Q |
303 |
taattttttatttgctactaagctcaattaatcttcaaa |
341 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
48484352 |
taatattttatttgctactaagctcaattaatgttcaaa |
48484314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 137 - 285
Target Start/End: Original strand, 38819694 - 38819843
Alignment:
| Q |
137 |
aaaactatagcatgttaatttagttagacttttgggttactgcacaaaaaggaacgagaagcttctaatctatgaatacctcccaaataaaagcttagat |
236 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
38819694 |
aaaactacagcatgttaatttagttagacttttgggttactgcacaaaaaggaacgagaagcttctaatttatgactacctcccaaataaaagcttagat |
38819793 |
T |
|
| Q |
237 |
cattatctcattggtctgtaacattac-ttgtccctattaagttttcttc |
285 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
38819794 |
cattttctcattggtttgtaacattactttgtccctattaagttttcttc |
38819843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 386 - 510
Target Start/End: Original strand, 38819845 - 38819967
Alignment:
| Q |
386 |
agaattgaatttaatgcagatccaaggaaatcaaatcttctagattggaccaagcgtgtgaatatcattgaagaaaattactcaaggccttctttatctc |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | | || ||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
38819845 |
agaattgaatttaatgcagatccaaggaaatcaattttgcttgattggaggaagcgtgtgaatgtcattgaag-ggattactgaaggccttctttatctc |
38819943 |
T |
|
| Q |
486 |
caagagtactcagagttttactata |
510 |
Q |
| |
|
||||||||||| | |||||||||| |
|
|
| T |
38819944 |
taagagtactca-aattttactata |
38819967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 38819555 - 38819609
Alignment:
| Q |
84 |
gtaattctctgatgacaatgttatgattttgtttttgtcaggggaaattatgtaa |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
38819555 |
gtaattctctgatgacaatgttatgattttgtttttgtcgggggaaattacgtaa |
38819609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University