View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4989-Insertion-6 (Length: 497)

Name: NF4989-Insertion-6
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4989-Insertion-6
NF4989-Insertion-6
[»] chr5 (6 HSPs)
chr5 (6-223)||(31572281-31572505)
chr5 (311-497)||(31572607-31572793)
chr5 (27-136)||(11492547-11492655)
chr5 (199-305)||(11492679-11492786)
chr5 (323-385)||(11492831-11492893)
chr5 (247-305)||(31572516-31572574)
[»] chr7 (2 HSPs)
chr7 (49-192)||(24730229-24730374)
chr7 (347-377)||(22354776-22354806)
[»] chr3 (1 HSPs)
chr3 (84-136)||(27057828-27057880)
[»] chr1 (1 HSPs)
chr1 (84-136)||(39833594-39833646)
[»] chr2 (1 HSPs)
chr2 (79-186)||(4272966-4273075)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 31572281 - 31572505
Alignment:
Q  6 cattccaattattgaaaataaagaattcatggttac-------aatacataagaaactacacaatatgaagaatcatcgcacacaagcttattcttgttc 98  Q
    |||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31572281 cattccaattattgaaaataaataattcatggttacaacttacaatacataagaaactacacaatatgaagcatcatcgcacacaagcttattcttgttc 31572380  T
Q  99 ggaaatgcactccacccagttatgagcaaatgtctctggttgcacttctcccacgaacagaataaatcaaacccccaagcagtcaacgggcaacatacta 198  Q
     |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  31572381 agaaatttactccacccagttatgagcaaatgtctctggttgcacttctcccacgaacagaataaatcaaacccccaagcagtcaacgggcaatttacta 31572480  T
Q  199 taatgccaagtaatataagtgactt 223  Q
    |||||||||||||||||| ||||||    
T  31572481 taatgccaagtaatataattgactt 31572505  T

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Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 311 - 497
Target Start/End: Original strand, 31572607 - 31572793
Alignment:
Q  311 aaaagcgtatctgatgtctaacacgtgtaagtgtttgacaccaacataacaccgacacatatgattatattgaataaatgtattacaaaaatgttctatg 410  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || |    
T  31572607 aaaagtgtgtctgatgtctaacacgtgtaagtgtttgacaccaacacaacaccgacacatgtgattatattgaataaatgtattacaaaaatgttttaag 31572706  T
Q  411 gtgagtgttgctaaaacacataaatgtagtagtgagcaagcattcacataaattagaaagttgaataaccttctgttttttctattg 497  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31572707 atgagtgttgctaaaacacataaatgtagtagtgagcaagcattcacataaattagaaagttgaataaccttctgttttttctattg 31572793  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 11492547 - 11492655
Alignment:
Q  27 agaattcatggttacaatacataagaaactacacaatatgaagaatcatcgcacacaagcttattcttgttcggaaatgcactccacccagttatgagca 126  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||  |||||||||||| |||||||| | ||||||||||||||||||||||||||    
T  11492547 agaattca-ggttacaatacataagaaactacacaatatgaagcatcactgcacacaagctttttcttgtttgaaaatgcactccacccagttatgagca 11492645  T
Q  127 aatgtctctg 136  Q
    ||||||||||    
T  11492646 aatgtctctg 11492655  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 305
Target Start/End: Original strand, 11492679 - 11492786
Alignment:
Q  199 taatgccaagtaatataagtgacttaaatcctagatacataa-agtaaataatgctcagaagagatttcataagaaataagcatacttctttatccatac 297  Q
    ||||||||||||||||||||||||||||||| ||||||| |  ||||| ||||||||| ||||||||||||||| ||||| |||||| ||||||||||||    
T  11492679 taatgccaagtaatataagtgacttaaatccaagatacagaggagtaactaatgctcataagagatttcataagcaataaacatactcctttatccatac 11492778  T
Q  298 tcctaaaa 305  Q
    ||||||||    
T  11492779 tcctaaaa 11492786  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 11492831 - 11492893
Alignment:
Q  323 gatgtctaacacgtgtaagtgtttgacaccaacataacaccgacacatatgattatattgaat 385  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  11492831 gatgtccaacacgtgtaagtgtttgacaccaacgtaacaccgacacatgtgattatattgaat 11492893  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 31572516 - 31572574
Alignment:
Q  247 taatgctcagaagagatttcataagaaataagcatacttctttatccatactcctaaaa 305  Q
    |||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  31572516 taatgcgcagaaaagatttcataagcaataaacatacttctttatccatactcctaaaa 31572574  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 24730374 - 24730229
Alignment:
Q  49 aagaaactacacaatatgaagaatcatcgcacacaagcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctc--tggttgcacttc 146  Q
    ||||||||||||||||| ||| ||||  || ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||  | | ||| || |    
T  24730374 aagaaactacacaatattaagcatcactgctcacaagcattttcttgttcgcaaatgcactccacccagttatgagcaaatgtctctatagctgctctgc 24730275  T
Q  147 tcccacgaacagaataaatcaaacccccaagcagtcaacgggcaac 192  Q
     | |||||||||| ||||||||||||||| ||||||||| ||||||    
T  24730274 gcacacgaacagagtaaatcaaacccccaggcagtcaacaggcaac 24730229  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 377
Target Start/End: Original strand, 22354776 - 22354806
Alignment:
Q  347 gacaccaacataacaccgacacatatgatta 377  Q
    |||||||||||||||||||||||||||||||    
T  22354776 gacaccaacataacaccgacacatatgatta 22354806  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 27057828 - 27057880
Alignment:
Q  84 agcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctg 136  Q
    ||||| || ||||||| |||||||||||||||| |||||||||||||||||||    
T  27057828 agcttttttttgttcgcaaatgcactccacccaattatgagcaaatgtctctg 27057880  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 39833646 - 39833594
Alignment:
Q  84 agcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctg 136  Q
    ||||| || ||||||| |||||||||||||||| |||||||||||||||||||    
T  39833646 agctttttattgttcgcaaatgcactccacccaattatgagcaaatgtctctg 39833594  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 4272966 - 4273075
Alignment:
Q  79 acacaagcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctc--tggttgcacttctcccacgaacagaataaatcaaacccccaa 176  Q
    |||||||||| ||||| ||   ||||||||||||||||||| |||||||||| |||  ||| ||| || |||| ||||||| |  |||||||||||| ||    
T  4272966 acacaagcttcttcttattaacaaatgcactccacccagttgtgagcaaatgcctccttggctgccctgctccaacgaacacaggaaatcaaacccctaa 4273065  T
Q  177 gcagtcaacg 186  Q
    ||| ||||||    
T  4273066 gcattcaacg 4273075  T

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