View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4989-Insertion-7 (Length: 453)

Name: NF4989-Insertion-7
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4989-Insertion-7
NF4989-Insertion-7
[»] chr8 (12 HSPs)
chr8 (50-453)||(3172708-3173110)
chr8 (81-428)||(3169161-3169508)
chr8 (81-245)||(2710369-2710533)
chr8 (93-248)||(13792158-13792313)
chr8 (81-235)||(2990203-2990357)
chr8 (81-142)||(3003191-3003252)
chr8 (81-142)||(9850283-9850344)
chr8 (85-245)||(2981105-2981265)
chr8 (84-211)||(2910284-2910411)
chr8 (81-149)||(3141339-3141407)
chr8 (82-142)||(3281687-3281747)
chr8 (396-428)||(3141075-3141107)
[»] scaffold0065 (1 HSPs)
scaffold0065 (83-353)||(46333-46602)
[»] chr7 (3 HSPs)
chr7 (81-424)||(7160316-7160659)
chr7 (274-428)||(3918067-3918221)
chr7 (93-143)||(3918352-3918402)
[»] chr1 (1 HSPs)
chr1 (81-142)||(10754840-10754901)
[»] chr6 (1 HSPs)
chr6 (85-235)||(18356607-18356757)


Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 50 - 453
Target Start/End: Complemental strand, 3173110 - 3172708
Alignment:
Q  50 aggttactttgaatttttaggtggaaagtttatggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaatt 149  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3173110 aggttactttgaattttcaggtggaaagtttatggaagatattggtaac-aatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaatt 3173012  T
Q  150 gatgattgtggcgacatttctagtttcaaaatgcacgatttaatacacgatcttggaatgcacgttgctggcaatgattgttgttatgtggatagtgagn 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  3173011 gatgattgtggcgacatttctagtttcaaaatgcacgatttaatacacgatcttgcaatgcacgttgctggcaatgattgttgttatgtggatagtgaga 3172912  T
Q  250 nnnnnntaattgtaggtagtccaatgcatgtaatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattt 349  Q
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3172911 aaaaaacaattgtaggtagtccaatgcgtgtaatgttgaaaagtgatgatattggtttgttaaagtc-ggtggatgcaatcaggatgcgaactttgattt 3172813  T
Q  350 tgttttccaat-attgggagacttggaatgagaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtcttgttctttaagtaa 448  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3172812 tgttttccaataattgggagacttggaatgaaaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtcttgttctttaagtaa 3172713  T
Q  449 gtcgt 453  Q
    |||||    
T  3172712 gtcgt 3172708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 81 - 428
Target Start/End: Complemental strand, 3169508 - 3169161
Alignment:
Q  81 atggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaattgatgattgtggcgacatttctagtttcaaaa 180  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||  |||| ||||  |||||| || ||    ||||||||||    
T  3169508 atggaagatattggtaaccaattcgtaaatattttcttgatgaagtcatttttgcaagatgtcgaaactgatagttgtggtgatatacacagtttcaaaa 3169409  T
Q  181 tgcacgatttaatacacgatcttggaatgcacgttgctggcaatgattgttgttatgtggatagtgagnnnnnnntaattgtaggtagtccaatgcatgt 280  Q
    |||| ||||||||||| ||||||| |||| | || || || ||||||||||||||  |||||||||||          ||||||  ||||| |||||| |    
T  3169408 tgcatgatttaatacatgatcttgcaatggaagtagccggtaatgattgttgttacctggatagtgagacaaaaaatcttgtagaaagtcccatgcatat 3169309  T
Q  281 aatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttgttttccaatattggga-gacttggaatga 379  Q
    |||| ||||||  |||||||||||||||||| |||| ||||||||||| |||| |||| |||||||||||| |  ||||  ||  || |  | |||||||    
T  3169308 aatgatgaaaatggatgatattggtttgttagagtc-ggtggatgcaagcaggctgcgtactttgattttgatgcccaaccttaagacgtttaggaatga 3169210  T
Q  380 gaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaag 428  Q
    | | ||  ||||| ||||||||||||||||||| |||||||||||||||    
T  3169209 ggaagacatgtctattatttcaaaattcaaatatttacgcgtcttgaag 3169161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 245
Target Start/End: Complemental strand, 2710533 - 2710369
Alignment:
Q  81 atggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaattgatgattgtggcgacatttctagtttcaaaa 180  Q
    ||||||||| |||||||  ||||||||||||||||||||||||| ||||| ||||||||||| ||| |  ||||   ||| ||  | ||| |||| ||||    
T  2710533 atggaagatgttggtaatcaatttgtaaatattttcttgatgaattcattcttccaagatgcagaattgaatgacgatggtgatgtatctggttttaaaa 2710434  T
Q  181 tgcacgatttaatacacgatcttggaatgcacgttgctggcaatgattgttgttatgtggatagt 245  Q
    |||| |||||||| |||||||||| ||  || || ||||||||||||||||||||  ||||||||    
T  2710433 tgcatgatttaatgcacgatcttgcaacacaagtagctggcaatgattgttgttacttggatagt 2710369  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 93 - 248
Target Start/End: Original strand, 13792158 - 13792313
Alignment:
Q  93 ggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaattgatgattgtggcgacatttctagtttcaaaatgcacgatttaa 192  Q
    |||||||||||||| || ||||| ||||| ||||||||||||||||||||  || | | ||    ||| || ||   |||||||||||||||  ||||||    
T  13792158 ggtaacgaatttgtgaagattttgttgataaagtcatttttccaagatgcaaaagtgggtggagatggagatatagttagtttcaaaatgcataatttaa 13792257  T
Q  193 tacacgatcttggaatgcacgttgctggcaatgattgttgttatgtggatagtgag 248  Q
    | || ||||||| |||| | || ||||||||||||||||||||  |||||||||||    
T  13792258 tgcatgatcttgcaatgaaagtagctggcaatgattgttgttacttggatagtgag 13792313  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 2990203 - 2990357
Alignment:
Q  81 atggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaattgatgattgtggcgacatttctagtttcaaaa 180  Q
    ||||||||| |||||||  ||||||||||||||||||||| ||| ||||| |||||||||||  |  || |||||  ||| ||  |  || |||| ||||    
T  2990203 atggaagatgttggtaatcaatttgtaaatattttcttgaagaattcattcttccaagatgcaaattttaatgatgatggtgatgtaactggttttaaaa 2990302  T
Q  181 tgcacgatttaatacacgatcttggaatgcacgttgctggcaatgattgttgtta 235  Q
    |||| |||||||| || ||||||| ||  || || ||||||||||||||||||||    
T  2990303 tgcatgatttaatgcatgatcttgcaacacaagtagctggcaatgattgttgtta 2990357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 3003191 - 3003252
Alignment:
Q  81 atggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgc 142  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||| ||||| |||||||||||    
T  3003191 atggaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaagatgc 3003252  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 9850344 - 9850283
Alignment:
Q  81 atggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgc 142  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||| ||||| |||||||||||    
T  9850344 atggaagatgttggtaaccaatttgttaatattttcttgatgaaatcattcttccaagatgc 9850283  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 2981105 - 2981265
Alignment:
Q  85 aagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaattgatgattgtggcgacatttctagtttcaaaatgca 184  Q
    ||||| |||||||  ||||||||||||||||||||| ||| ||||| |||||||||||   |||  || |   ||| || ||   | |||| ||||||||    
T  2981105 aagatgttggtaatcaatttgtaaatattttcttgaagaattcattcttccaagatgcaacaatgaattaccatggtgatatagatggttttaaaatgca 2981204  T
Q  185 cgatttaatacacgatcttggaatgcacgttgctggcaatgattgttgttatgtggatagt 245  Q
    ||||||||| |||||||||| ||  || || ||||||||||||||||||||  ||||||||    
T  2981205 cgatttaatgcacgatcttgcaacacaagtagctggcaatgattgttgttacttggatagt 2981265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 2910411 - 2910284
Alignment:
Q  84 gaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaattgatgattgtggcgacatttctagtttcaaaatgc 183  Q
    ||||||||||||||| |||| || || ||||||||||  ||||||||||| ||||||||  |||| |||||   ||| || || | ||||||||||||||    
T  2910411 gaagatattggtaaccaattcgtgaaaattttcttgacaaagtcattttttcaagatgcgaaaatggatgaagatggtgatatatatagtttcaaaatgc 2910312  T
Q  184 acgatttaatacacgatcttggaatgca 211  Q
    | |||||||| || ||||| | ||||||    
T  2910311 atgatttaattcatgatctagcaatgca 2910284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 3141407 - 3141339
Alignment:
Q  81 atggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaatt 149  Q
    |||||||| || |||||| ||||||| |  ||||| ||||||||||| |||||||||||||||||||||    
T  3141407 atggaagacatcggtaaccaatttgtgacgattttattgatgaagtcttttttccaagatgctgaaatt 3141339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 3281747 - 3281687
Alignment:
Q  82 tggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgc 142  Q
    |||||||| | |||||||||||||| || ||| ||||||| ||||||||||||||||||||    
T  3281747 tggaagatgtcggtaacgaatttgtgaagattctcttgataaagtcatttttccaagatgc 3281687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 3141107 - 3141075
Alignment:
Q  396 atttcaaaattcaaatacttacgcgtcttgaag 428  Q
    |||||||||||||||||||||||||||||||||    
T  3141107 atttcaaaattcaaatacttacgcgtcttgaag 3141075  T

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Target: scaffold0065 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 83 - 353
Target Start/End: Original strand, 46333 - 46602
Alignment:
Q  83 ggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaattgatgattgtggcgacatttctagtttcaaaatg 182  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| || || | |||||||||||||    
T  46333 ggaagatattggtaaccaattcgtaaagattttcttgatgaagtcattcttccaagatgctaaaattgatgattgtggtgatatatgtagtttcaaaatg 46432  T
Q  183 cacgatttaatacacgatcttggaatgcacgttgctggcaatgattgttgttatgtggatagtgagnnnnnnntaattgtaggtagtccaatgcatgtaa 282  Q
    || |||||||| || ||||||| ||||||  | || |||||||||||||||||  | | |||||||        | ||| ||| ||||| || |||||||    
T  46433 catgatttaatgcatgatcttgcaatgcaaatagccggcaatgattgttgttacataggtagtgagacaaaaagacttgcaggaagtcccattcatgtaa 46532  T
Q  283 tgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttgtt 353  Q
    |||||||    |||  |||||||| |||| |||| | ||||||||| |||| |||| ||||||||||||||    
T  46533 tgttgaagttggattttattggttggttagagtc-gttggatgcaagcaggttgcggactttgattttgtt 46602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 81 - 424
Target Start/End: Original strand, 7160316 - 7160659
Alignment:
Q  81 atggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaattgatgattgtggcgacatttctagtttcaaaa 180  Q
    ||||||||||| |||||  |||| |||||  ||||||| | ||||||| |||||||||||||  ||||||||| || |||  |  |   | | |||||||    
T  7160316 atggaagatatcggtaatcaattcgtaaaccttttcttcaagaagtcacttttccaagatgcaaaaattgatgtttttggtaatgtacatcggttcaaaa 7160415  T
Q  181 tgcacgatttaatacacgatcttggaatgcacgttgctggcaatgattgttgttatgtggatagtgagnnnnnnntaattgtaggtagtccaatgcatgt 280  Q
    | |||||||||||||| || |||| |||||| || || |||| ||||||  ||||  |||||||||||        | ||||||| |||||  |||||||    
T  7160416 tacacgatttaatacatgaccttgcaatgcaagtagccggcattgattgccgttacttggatagtgagacaacaagacttgtaggaagtcccgtgcatgt 7160515  T
Q  281 aatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttgttttccaatattgg-gagacttggaatga 379  Q
    |||| |||||||||||| ||||||||||||| | ||   ||||||||| || | |||||||||| |||||| || |||| |||   |||| |||||| ||    
T  7160516 aatggtgaaaagtgatgctattggtttgttagaatcat-tggatgcaagcaagttgcgaactttaattttgcttaccaacatttcagagaattggaacga 7160614  T
Q  380 gaaggaattgtcttttatttcaaaattcaaatacttacgcgtctt 424  Q
    ||||||| | ||| |||||| ||||||||||||||||||||||||    
T  7160615 gaaggaagtatctgttattttaaaattcaaatacttacgcgtctt 7160659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 428
Target Start/End: Complemental strand, 3918221 - 3918067
Alignment:
Q  274 tgcatgtaatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttgttttccaata-ttgggagactt 372  Q
    |||||||||||||| ||||||| | ||||||||||||  ||||   || ||||||  | ||||||||||||||||||||| ||||| | ||  |||| |     
T  3918221 tgcatgtaatgttgcaaagtgaagctattggtttgttggagtcat-tgaatgcaagaaagatgcgaactttgattttgttgtccaacaattcagagagta 3918123  T
Q  373 ggaatgagaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaag 428  Q
     ||||||||||||||||| | |||| |||||||||||||||||||| || ||||||    
T  3918122 tgaatgagaaggaattgtttgttatatcaaaattcaaatacttacgtgtattgaag 3918067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 3918402 - 3918352
Alignment:
Q  93 ggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgct 143  Q
    |||||| |||| || |||||||| ||||||||||||||||| |||||||||    
T  3918402 ggtaaccaattcgtgaatattttgttgatgaagtcattttttcaagatgct 3918352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 10754901 - 10754840
Alignment:
Q  81 atggaagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgc 142  Q
    ||||||||| |||||||  ||||||||||||||||||||| ||| ||||| |||||||||||    
T  10754901 atggaagatgttggtaatcaatttgtaaatattttcttgacgaattcattcttccaagatgc 10754840  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 235
Target Start/End: Original strand, 18356607 - 18356757
Alignment:
Q  85 aagatattggtaacgaatttgtaaatattttcttgatgaagtcatttttccaagatgctgaaattgatgattgtggcgacatttctagtttcaaaatgca 184  Q
    ||||| |||||||  |||||||||| |||||||||| ||| ||||| ||||||||||| ||  |  ||| |  ||| ||  |  || |||| ||||||||    
T  18356607 aagatgttggtaatcaatttgtaaaaattttcttgaagaattcattcttccaagatgcagatttgaatgttcatggtgatgtaactggttttaaaatgca 18356706  T
Q  185 cgatttaatacacgatcttggaatgcacgttgctggcaatgattgttgtta 235  Q
     |||||||| || ||||||| ||  || || ||||||||||||||||||||    
T  18356707 tgatttaatgcatgatcttgcaacacaagtagctggcaatgattgttgtta 18356757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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