View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4989_high_11 (Length: 328)
Name: NF4989_high_11
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 6411183 - 6410879
Alignment:
| Q |
17 |
aagaactggcagaaaacgccttgagaaatgtgagactccaaacacttgtgtatgtt-acaattttttgttgtgatatatatttttacttatttcgacaaa |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6411183 |
aagaactggcagaaaacgtcttgagaaatgtgagactccaaacacttgtgtatgtttacaatattttgttgtgatatatatttttacttatttcgacaaa |
6411084 |
T |
|
| Q |
116 |
acatattttgttactataatgaacagatccagagaccgagagtcggagtggatatttttacattccaagagatgaattaatcatccctcagaaatcgtca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6411083 |
acatattttgttactataatgaacagatccagagaccgagagtcggagtggatatttttacattccaagagatgaattaatcatccctcagaaatcgtca |
6410984 |
T |
|
| Q |
216 |
gactttgttgttaacaccctcaaattaatatctcaacatggaacacctcaattaagatcgctagttagattacaaaacgatcaaccagagtttaactcct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410983 |
gactttgttgttaacaccctcaaattaatatctcaacatgagacacctcaattaagatcgctagttagattacaaaacgatcaaccagagtttaactcct |
6410884 |
T |
|
| Q |
316 |
ttgat |
320 |
Q |
| |
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||||| |
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|
| T |
6410883 |
ttgat |
6410879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 6392019 - 6391715
Alignment:
| Q |
17 |
aagaactggcagaaaacgccttgagaaatgtgagactccaaacacttgtgtatgtta-caattttttgttgtgatatatatttttacttatttcgacaaa |
115 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6392019 |
aagaactggcagaaaacacctcgagaaatgtgagactccaaacacttgtgtctgtttgcaattttttgttgtgatatatatttttacttatttcgacaaa |
6391920 |
T |
|
| Q |
116 |
acatattttgttactataatgaacagatccagagaccgagagtcggagtggatatttttacattccaagagatgaattaatcatccctcagaaatcgtca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
6391919 |
acatattttgttactataatgaacagatccagagactgagagtcggagtaactatttttacattccaagagatgaattaattatccctccgaaatcgtca |
6391820 |
T |
|
| Q |
216 |
gactttgttgttaacaccctcaaattaatatctcaacatggaacacctcaattaagatcgctagttagattacaaaacgatcaaccagagtttaactcct |
315 |
Q |
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|||||||||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| |
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| T |
6391819 |
gactttgttgttaacaccatcaaatcaatatctcaatatgagacacctcaattaagatcgctagtaagattacaaaatgatcaagtagagtttaactcct |
6391720 |
T |
|
| Q |
316 |
ttgat |
320 |
Q |
| |
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||||| |
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|
| T |
6391719 |
ttgat |
6391715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 6371017 - 6370957
Alignment:
| Q |
134 |
atgaacagatccagagaccgagagtcggagtggatatttttacattccaagagatgaatta |
194 |
Q |
| |
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||||||||||||| |||| |||||||||| ||| ||||||||||||||||||||||| |
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| T |
6371017 |
atgaacagatccaaagactgagagtcggactggcagaatttacattccaagagatgaatta |
6370957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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