View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4989_high_20 (Length: 246)
Name: NF4989_high_20
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2518336 - 2518565
Alignment:
| Q |
1 |
atcaacgaggtaaatactaatgatttcatagaaaatatgcgattgtgttgatacatttctttgttagccaaaaacaccgactaatatcacatgcttgttt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2518336 |
atcaacgaggtaaatgctaatgatttcatagaaaatatgcgattgtgttgatacatttctttgttagccaaaaacaccgactcatatcacatgcttgttt |
2518435 |
T |
|
| Q |
101 |
ttaagagttggaagcaacccttctgaagcaaccaagagaatgaagcgtcaatctcggtccaaaacatttaaggttgagattagtcatgtatctaaaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2518436 |
ttaagagttggaagcaacccttctgaagcaaccaagagaatgaagcatcaatctcggtccaaaacatttaaggttgagattagtcatgtatctaaaattc |
2518535 |
T |
|
| Q |
201 |
cgttacaagaaattacagatgccttgagag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2518536 |
cgttacaagaaattacagatgccttgagag |
2518565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University