View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4989_high_4 (Length: 453)
Name: NF4989_high_4
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Original strand, 29650350 - 29650774
Alignment:
| Q |
19 |
atagggacacacttcatagaacagccatatcctaagatcttcgtttattagccacgtatgcatttatctgcatttactgttacaaatctcaatactttct |
118 |
Q |
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| T |
29650350 |
atagggacacacttcatagaacagccatatcctaagatcttcgtttattagccacgtatgcatttatctgcatttactgttacaaatctcaatactttct |
29650449 |
T |
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| Q |
119 |
agctttttcctgcaagttctcgtgattacataaactaaaacaacgaaaagtgagactgtaaaatgcttttgattgtcgttgtttttgttgtttatctaat |
218 |
Q |
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| T |
29650450 |
agctttttcctgcaagttctcgtgattacataaactaaaacaacgaaaagtgagactgtaaaatgcttttgattgtcgttgtttttgttgtttatctaat |
29650549 |
T |
|
| Q |
219 |
tagaagaacttgaagacaaaagctggaaaatattacaaatcctcatgtaaaatgaaagcaagtcatgtttctcctcccttgccaagaggttatgaaagag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29650550 |
tagaagaacttgaagacaaaagctggaaaatattacaaatcctcatgtaaaatgaaagcaagtcatgtttctcatcccttgccaagaggttatgaaagag |
29650649 |
T |
|
| Q |
319 |
gtaagtggagaaaaatattcatcatctatgaacataaaagaaatgcaacagcacattattttcatcacattctttatgattgattcacttttctactcgg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29650650 |
gtaagtggagaaaaatattcatcatctatgaacataaaagaaatgcaacagcacattattttcatcacattctttatgattgattcacttttctactcgg |
29650749 |
T |
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| Q |
419 |
gttatttaacatcttgcggcttcat |
443 |
Q |
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||||||||||||||||||||||||| |
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| T |
29650750 |
gttatttaacatcttgcggcttcat |
29650774 |
T |
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