View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4989_high_7 (Length: 358)
Name: NF4989_high_7
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 41479764 - 41479415
Alignment:
| Q |
1 |
tgtaaacgtcatccacacgaaagttgagttcaactactgatattttttgttatcttaagtagttcaatacgaatttctcctataagcgacgaagggctcg |
100 |
Q |
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| T |
41479764 |
tgtaaacttcatccacacgaaagttgagttcaactactgatttttttt--tatcttaagtagttcaatacgaatttctcctataagcgacgaagggctcg |
41479667 |
T |
|
| Q |
101 |
tgagggaacagtttccttctca--gagaatggtagttgccacactaatgtctgaagatctttcttgaagctaatttttaaaaatacagttcaaactaatg |
198 |
Q |
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| T |
41479666 |
cgagggaacagtttccttctcaaagagaatggtagtcgccacactaatgtctgaagatctttcttgaagctaatttttaaaaatacagttcaaactaatg |
41479567 |
T |
|
| Q |
199 |
atttcttattgtttggaaataatgtaatgatggataatataatgatttatttctatggccaggtacgatttcaaatgaatttaacttaaatgtttcaaga |
298 |
Q |
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| T |
41479566 |
atttcttattgtttggaaataatgtaatgatggataatataatgatttatttctatggccaggtatgatttcaaatgaatttaacttaaatgtttcaaga |
41479467 |
T |
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| Q |
299 |
caaaaatttaaaccatactacaaagagagacaattgataccacatgcctttg |
350 |
Q |
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| T |
41479466 |
caaaaatttaaaccaaactacaaagagagacaattgataccacatgcctttg |
41479415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 41487528 - 41487445
Alignment:
| Q |
258 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactacaaagagagacaattgataccac |
341 |
Q |
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| T |
41487528 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacaggagacgattgataccac |
41487445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 341
Target Start/End: Complemental strand, 41486677 - 41486578
Alignment:
| Q |
235 |
atataatgatttatttctatggccaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactac-aaagagagacaatt |
333 |
Q |
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| T |
41486677 |
atataatgctttatttttaggttcaggtacgatttcaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaatt |
41486586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 40753830 - 40753788
Alignment:
| Q |
271 |
aaatgaatttaacttaaatgtttcaagacaaaaatttaaacca |
313 |
Q |
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| T |
40753830 |
aaatgaatttaacttaaatgtttcgagacaaaaatttaaacca |
40753788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 41472436 - 41472357
Alignment:
| Q |
44 |
tttttgttatcttaagtagttcaatacgaatttctcctataa-gcgacgaagggctcgtgagggaacagtttccttctca |
122 |
Q |
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| T |
41472436 |
ttttttttatctaaagtagtacactacgaatttctcctataatgtgacgaaggtctggcgagggaacaatttccttctca |
41472357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 16406949 - 16407054
Alignment:
| Q |
12 |
tccacacgaaagttgagttcaactactgatattttttgttatcttaagtagttcaatacgaatttctcctat-aagcgacgaagggctcgtgagggaaca |
110 |
Q |
| |
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| T |
16406949 |
tccacacgaaagttgagttc---tactga-atttttt--tatctaaagtagttcactacgaatttctcctatgatgtgacgaaggtctggtgagggaaca |
16407042 |
T |
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| Q |
111 |
gtttccttctca |
122 |
Q |
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| T |
16407043 |
atttccttctca |
16407054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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