View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4989_high_8 (Length: 352)
Name: NF4989_high_8
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 23163406 - 23163081
Alignment:
| Q |
11 |
cacagagacatatattatagaaagaaagcaagcaaatggaatgagagaaagaacctgagggcaatggccaacatttggaaggacaatgaagtcttccact |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23163406 |
cacagagacatatattatagaaagaaagcaagcgaatggaatgagagaaagaacctgagggcaatggccaacatttggaaggacaatgaagtcttccact |
23163307 |
T |
|
| Q |
111 |
gaatcaaaatttccgtaatttcttcccatctcaattggttcccaaggatccttgtcaccccatgctatcaaaaccggacactgaaataagagaaataatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23163306 |
gaatcaaaatttccgtaatttcttcccatctcaattggttcccaaggatccttgtcaccccatgctatcaaaaccggacactgaaataagagaaataatg |
23163207 |
T |
|
| Q |
211 |
catattatttgcatttgttgcattaaagtttattaaaacttcccacttcatcatgtagggcgggaggaaacttacctttacttggggtagcagttcctcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23163206 |
catattatttgcatttgttgcattaaagtttattaaaacttcccacttcatcatgtagggcgggaggaaacttacctttacttggggtagcagttcctcc |
23163107 |
T |
|
| Q |
311 |
ggaagagggcctcctgagtaacaaat |
336 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
23163106 |
ggaagagggcctcctgagtaacaaat |
23163081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University