View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4989_low_1 (Length: 738)
Name: NF4989_low_1
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 699; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 1 - 719
Target Start/End: Original strand, 54791100 - 54791818
Alignment:
| Q |
1 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54791100 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
54791199 |
T |
|
| Q |
101 |
ccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggata |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54791200 |
ccgaagctgtcaaccaacctgtaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgattctggata |
54791299 |
T |
|
| Q |
201 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54791300 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaat |
54791399 |
T |
|
| Q |
301 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791400 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
54791499 |
T |
|
| Q |
401 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaatttcagatattgttca |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
54791500 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacagtttcagatattgttca |
54791599 |
T |
|
| Q |
501 |
agaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgag |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791600 |
agaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgag |
54791699 |
T |
|
| Q |
601 |
aagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgcctt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791700 |
aagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgcctt |
54791799 |
T |
|
| Q |
701 |
attgtatgtaaaggctgtg |
719 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
54791800 |
attgtatgtaaaggctgtg |
54791818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 1 - 715
Target Start/End: Original strand, 52283758 - 52284472
Alignment:
| Q |
1 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
52283758 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtttttggagactgacctagcaaatgaagcagaccaaatacctcccccgcctttga |
52283857 |
T |
|
| Q |
101 |
ccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggata |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| | || ||| ||||||| |
|
|
| T |
52283858 |
ccgaagctgtcaaccaacctgcaccacaggttgagaactatgtctggccatggacaggcataattgttaatattaagagcaaactgaatgattctggata |
52283957 |
T |
|
| Q |
201 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52283958 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaat |
52284057 |
T |
|
| Q |
301 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284058 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
52284157 |
T |
|
| Q |
401 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaatttcagatattgttca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284158 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaatttcagatattgttca |
52284257 |
T |
|
| Q |
501 |
agaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgag |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
52284258 |
agaagcatctgaaagcagaaatagcattgtggaaaacctggctaatgaaattgatattacaaatgaaaacctcaacaaaatgcaatataagtataacgag |
52284357 |
T |
|
| Q |
601 |
aagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgcctt |
700 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
52284358 |
aagaccatgtctttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatttctgttagaatctgattttgtctt |
52284457 |
T |
|
| Q |
701 |
attgtatgtaaaggc |
715 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
52284458 |
attgtatgtaaaggc |
52284472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 1 - 719
Target Start/End: Complemental strand, 54778045 - 54777328
Alignment:
| Q |
1 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54778045 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
54777946 |
T |
|
| Q |
101 |
ccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggata |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
54777945 |
ccgaagctgtcaaccaacctgtaccgcaggttgagaattatgt-tggccatggacaggtataatcgttaacattaagagcaaccttaacgattctggata |
54777847 |
T |
|
| Q |
201 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54777846 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaat |
54777747 |
T |
|
| Q |
301 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
54777746 |
ggtttcaagaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggaatggaattcaatggacatgctggccagttcagacattt |
54777647 |
T |
|
| Q |
401 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaatttcagatattgttca |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54777646 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccctcggaacaaaggaaggctgagaacaatttcggatattgttca |
54777547 |
T |
|
| Q |
501 |
agaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgag |
600 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
54777546 |
agaagcatctgaaagagaaaatagcaaacgggaaaacctgaccaatgaaattgacattccaaatgaaaacctcaacataattcggtataagtataatgag |
54777447 |
T |
|
| Q |
601 |
aagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgcctt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54777446 |
aagaccatgtccttaagtaggatgctggaggagaatgacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgcctt |
54777347 |
T |
|
| Q |
701 |
attgtatgtaaaggctgtg |
719 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
54777346 |
attgtatgtaaaggctgtg |
54777328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 16 - 707
Target Start/End: Original strand, 799049 - 799734
Alignment:
| Q |
16 |
caaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaagctgtcaacc |
115 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||||||||| |||||| |||||||||| | | |||||| || |
|
|
| T |
799049 |
caaaaagcaaaccacctggctctggcaaagtttttgaggactgacttagcaaatgaagcagaccaagtacctcgcccggctttgactgtagctgttgtcc |
799148 |
T |
|
| Q |
116 |
aacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggatactggctaaaggaatt |
215 |
Q |
| |
|
|||||| | | |||||||| || || ||||| |||||||||||| | || ||||| | |||| | | ||| ||||||||| || ||||||||| |
|
|
| T |
799149 |
aacctgtcc---aagttgagaactacgtttggccgtggacaggcatacttgtcaacataa---gcaaatcacatgattctggatacttgcaaaaggaatt |
799242 |
T |
|
| Q |
216 |
tgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaatggtttcatgaatgca |
315 |
Q |
| |
|
||| ||||||| ||| |||| ||| ||| ||||| ||||||||| || |||||| ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
799243 |
tgctaagtacaaaccgttggctgttcatacgttcttgatggatggtaactccgtggctgttatagacttcaacaatgactggaatgggtttatgaatgca |
799342 |
T |
|
| Q |
316 |
agtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacatttatggatgggttgcac |
415 |
Q |
| |
|
||||| ||||||||| |||||| ||||||| || ||| || ||||| |||||||| | |||| |||||| ||||||||| ||||| || |||||||||| |
|
|
| T |
799343 |
agtgagcttgagaaatgctttgagactaaacgtcgtggaaaaaaggattggaattccatggacttgcaggacagttcagagatttacggttgggttgcac |
799442 |
T |
|
| Q |
416 |
gtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaatttcagatattgttcaagaagcatctgaaag |
515 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
799443 |
gtgaagatgattataattgtccagggttgattggggagtaccttcgcaacaaaggaaggctgaggacaatttcagatatagttcaagaagcatctcaaag |
799542 |
T |
|
| Q |
516 |
cagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtcctta |
615 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
799543 |
cagaaatagcattgtggaaaacctggcaaatgagattgatattactaatgaaaatctcaacaagatgcagtataggtataatgagaagactatgtccttg |
799642 |
T |
|
| Q |
616 |
agtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtat |
707 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
799643 |
agtaggatgctggaggagaaagacaaacttcacagtgcttttgttgaaggtttgtataatttctgttataatctgattttgccttattgtat |
799734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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