View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4989_low_2 (Length: 597)
Name: NF4989_low_2
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_low_2 |
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| [»] scaffold0427 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 39 - 581
Target Start/End: Original strand, 4296382 - 4296925
Alignment:
| Q |
39 |
atcatcatttaatatataacataattcattgaacgtgtcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtgga |
138 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4296382 |
atcatcatttaatacataacataattcattgaacgtgtcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtgga |
4296481 |
T |
|
| Q |
139 |
cttgagtgacacttatattcaaagttgaagaaccttgatattcttcaaattatattaaagaatacatttttagagaatcaaaacaacttcataacattac |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
4296482 |
cttgagtgacacttatattcaaagttgaagaaccttgatattcttcaagttatattaaagaataaatttttagagaatcaaaacaacttcataacattac |
4296581 |
T |
|
| Q |
239 |
ccttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattgannnnnnnncccttcaatttaaaaacttttgaag |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
4296582 |
ccttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattga-tttttttcccttcaatttaaaaacttttgaag |
4296680 |
T |
|
| Q |
339 |
tgaattacataacccagatgggttataaagagaaaatttctaaaatgagtgatttaagtc--tatgggaagagaaaattgaatttcaaattgggattaga |
436 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
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|
| T |
4296681 |
tgaattacaaaacccagatgggttataaagagaaaatttccaaaatgagtgatttaagtctatatgggaagagaaaattgaacttgaaattgggattaga |
4296780 |
T |
|
| Q |
437 |
gttcttaaaatttatgaaagagaggaatgaaaagttgagattggggaatggattttgagaagaaactgagaaggttgaaagataaatcaaagaaagcggg |
536 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4296781 |
gtttttaaaattgatgaaagagaggaatgaaaagttgagattggggaatggattttgagaagaaactgagaaggttgaaagataaatcaaagaaagcgag |
4296880 |
T |
|
| Q |
537 |
aatgggataaatttggaaaagtagttggggaatggtagaagaaaa |
581 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
4296881 |
aatgggataagtttggaaaagtagttggggaatggtagaagaaaa |
4296925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 39 - 581
Target Start/End: Complemental strand, 3385966 - 3385423
Alignment:
| Q |
39 |
atcatcatttaatatataacataattcattgaacgtgtcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtgga |
138 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3385966 |
atcatcatttaatacataacataattcattgaacgtgtcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtgga |
3385867 |
T |
|
| Q |
139 |
cttgagtgacacttatattcaaagttgaagaaccttgatattcttcaaattatattaaagaatacatttttagagaatcaaaacaacttcataacattac |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
3385866 |
cttgagtgacacttatattcaaagttgaagaaccttgatattcttcaagttatattaaagaataaatttttagagaatcaaaacaacttcataacattac |
3385767 |
T |
|
| Q |
239 |
ccttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattga-nnnnnnnncccttcaatttaaaaacttttgaa |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
3385766 |
ccttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattgatttttttttccattcaatttaaaaacttttgaa |
3385667 |
T |
|
| Q |
338 |
gtgaattacataacccagatgggttataaagagaaaatttctaaaatgagtgatttaagtctatgggaagagaaaattgaatttcaaattgggattagag |
437 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
3385666 |
gtgaattacaaaacccagatgggttataaagagaaaatttccaaaatgagtgatttaagtctatgggaagagaaaattgaacttgaaattgggattagag |
3385567 |
T |
|
| Q |
438 |
ttcttaaaatttatgaaagagaggaatgaaaagttgagattggggaatggattttgagaagaaactgagaaggttgaaagataaatcaaagaaagcggga |
537 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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|
| T |
3385566 |
ttcttaaaattgatgaaagagaggaacgaaaagttgagattggggaatggattttgagaagaaactgagaaggttgaaagataaatcgaagaaagcgaga |
3385467 |
T |
|
| Q |
538 |
atgggataaatttggaaaagtagttggggaatggtagaagaaaa |
581 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
3385466 |
atgagataaatttaaaaaagtagttggggaatggtagaagaaaa |
3385423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 39 - 581
Target Start/End: Complemental strand, 7572 - 7045
Alignment:
| Q |
39 |
atcatcatttaatatataacataattcattgaacgtgtcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtgga |
138 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7572 |
atcatcatttaatacataacataattcattgaacgtgtcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtgga |
7473 |
T |
|
| Q |
139 |
cttgagtgacacttatattcaaagttgaagaaccttgatattcttcaaattatattaaagaatacatttttagagaatcaaaacaacttcataacattac |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
7472 |
cttgagtgacacttatattcaaagttgaaaaaccttgatatt--------------aaagaataaatttttagagaatcaaaacaacttcataacattac |
7387 |
T |
|
| Q |
239 |
ccttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattgannnnnnnncccttcaatttaaaaacttttgaag |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
7386 |
ccttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattgattttttt-cccttcaatttaaaaacttttgaag |
7288 |
T |
|
| Q |
339 |
tgaattacataacccagatgggttataaagagaaaatttctaaaatgagtgatttaagtctatgggaagagaaaattgaatttcaaattgggattagagt |
438 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
7287 |
tgaattacaaaacccagatgggttataaagagaaaatttccaaaatgagtgatttaagtctatgggaagagaaaattgaacttgaaattgggattagagt |
7188 |
T |
|
| Q |
439 |
tcttaaaatttatgaaagagaggaatgaaaagttgagattggggaatggattttgagaagaaactgagaaggttgaaagataaatcaaagaaagcgggaa |
538 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7187 |
tcttaaaattgatgaaagagaggaatgaaaagttgagattggggaatggattttaagaagaaactgagaaggttgaaagataaatcaaagaaagcgagaa |
7088 |
T |
|
| Q |
539 |
tgggataaatttggaaaagtagttggggaatggtagaagaaaa |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7087 |
tgggataaatttggaaaagtagttggggaatggtagaagaaaa |
7045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 63 - 180
Target Start/End: Complemental strand, 12997323 - 12997205
Alignment:
| Q |
63 |
ttcattgaacgtgtcagttacat-tttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggacttgagtgacacttatattcaaa |
161 |
Q |
| |
|
|||||||||| | |||||||||| ||| | |||||||||||||| ||| |||||| |||||||||| |||||||| ||||| ||| ||| || ||||| | |
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|
| T |
12997323 |
ttcattgaacctatcagttacatgtttttgaaacaaattaagctctttatctaaggttgaattttccattgagtgaacttgtgtggcacgtagattcaga |
12997224 |
T |
|
| Q |
162 |
gttgaagaaccttgatatt |
180 |
Q |
| |
|
|||||||||||| ||||| |
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|
| T |
12997223 |
attgaagaacctttatatt |
12997205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 13030917 - 13030800
Alignment:
| Q |
64 |
tcattgaacgtgtcagttacat-tttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggacttgagtgacacttatattcaaag |
162 |
Q |
| |
|
||||||||| | |||||||||| ||| | ||||||| |||| | ||| |||||| |||||||||| |||||||| ||||| ||| ||| || ||||| | |
|
|
| T |
13030917 |
tcattgaacctatcagttacatgtttttgaaacaaactaagttctttatctaaggttgaattttccattgagtgaacttgtgtggcacgtagattcagaa |
13030818 |
T |
|
| Q |
163 |
ttgaagaaccttgatatt |
180 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13030817 |
ttgaagaaccttgatatt |
13030800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 13008562 - 13008445
Alignment:
| Q |
63 |
ttcattgaacgtgtcagttacat-tttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggacttgagtgacacttatattcaaa |
161 |
Q |
| |
|
|||||||||| | |||| ||||| ||| | |||||||||||||| ||| |||| |||||||| ||| || ||||||||||| ||| ||| || ||||| | |
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|
| T |
13008562 |
ttcattgaacctatcagatacatgtttttgaaacaaattaagctctttatctatgcttgaatattccatagagtggacttgggtggcacgtagattcaca |
13008463 |
T |
|
| Q |
162 |
gttgaagaaccttgatat |
179 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
13008462 |
attgaagaacctttatat |
13008445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 180
Target Start/End: Complemental strand, 12976163 - 12976045
Alignment:
| Q |
63 |
ttcattgaacgtgtcagttacat-tttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggacttgagtgacacttatattcaaa |
161 |
Q |
| |
|
|||||||||| | |||| ||||| ||| | |||||||| ||||| ||| ||||||||||||| || ||||| || ||||||||| ||| || ||||| | |
|
|
| T |
12976163 |
ttcattgaacctatcagatacatgtttttgaaacaaatcaagctctttgtctaagcttgaatattgcattgaatgaacttgagtggcacgtagattcaga |
12976064 |
T |
|
| Q |
162 |
gttgaagaaccttgatatt |
180 |
Q |
| |
|
|||| ||||||| ||||| |
|
|
| T |
12976063 |
attgatgaacctttatatt |
12976045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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