View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4989_low_24 (Length: 242)
Name: NF4989_low_24
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_low_24 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 38141044 - 38140820
Alignment:
| Q |
18 |
catgactcaaatactattttaggaaaacccattattgtacaagagtttggaaagtcttcaaagacacctggatttagcatagctataagggatagttact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38141044 |
catgactcaaatactattttaggaaaacccattattgtacaagagtttggaaagtcttcaaagacacctggatttagcatagctataagggatagttact |
38140945 |
T |
|
| Q |
118 |
ttaagaaagtatacaatgccatatctaaaagtgctatgagtggaggctcatgtgcaggtggaattttctggctacttctgtctcaaggaatggataccta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38140944 |
ttaagaaagtatacaatgccatatctaaaagtgctatgagtggaggctcatgtgcaggtggaattttctggctacttctgtctcaaggaatggataccta |
38140845 |
T |
|
| Q |
218 |
tggagatggctatcaagtcattttt |
242 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
38140844 |
tggagatggctatgaagtcattttt |
38140820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 38152935 - 38152714
Alignment:
| Q |
21 |
gactcaaatactattttaggaaaacccattattgtacaagagtttggaaagtcttcaaagacacctggatttagcatagctataagggatagttacttta |
120 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||| | |
|
|
| T |
38152935 |
gactcaaacactattttagggaagcccattattgtacaagagtttggaaagtcttcaaagtcacctggatttaccgtagctataagggataattacttca |
38152836 |
T |
|
| Q |
121 |
agaaagtatacaatgccatatctaaaagtgctatgagtggaggctcatgtgcaggtggaattttctggctacttctgtctcaaggaatggatacctatgg |
220 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
38152835 |
agaaagtatacaatgccatagctacaagtgctatgagtggaggctcatgtgcaggtggaattttctggcaactcatgtctcaaggaatggatagctatgg |
38152736 |
T |
|
| Q |
221 |
agatggctatcaagtcattttt |
242 |
Q |
| |
|
|||||| || ||||||||||| |
|
|
| T |
38152735 |
agatggaaatgaagtcattttt |
38152714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 38108585 - 38108364
Alignment:
| Q |
21 |
gactcaaatactattttaggaaaacccattattgtacaagagtttggaaagtcttcaaagacacctggatttagcatagctataagggatagttacttta |
120 |
Q |
| |
|
|||||||||||||||||| ||| ||| | || || ||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
38108585 |
gactcaaatactattttaaaaaagcccttggttatagcagagtttggaaagtcttcaaaatcacatggatatagcatagctataagggataattacttta |
38108486 |
T |
|
| Q |
121 |
agaaagtatacaatgccatatctaaaagtgctatgagtggaggctcatgtgcaggtggaattttctggctacttctgtctcaaggaatggatacctatgg |
220 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||||| |
|
|
| T |
38108485 |
agaaagtatacaatgccatatctagaagtgctatcaatggaggctcatgtgcaggtggaattttctggcaactcctatctcaagggatggatacctatgg |
38108386 |
T |
|
| Q |
221 |
agatggctatcaagtcattttt |
242 |
Q |
| |
|
|||||| ||| ||||| ||||| |
|
|
| T |
38108385 |
agatggatatgaagtcgttttt |
38108364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 38084418 - 38084200
Alignment:
| Q |
24 |
tcaaatactattttaggaaaacccattattgtacaagagtttggaaagtcttcaaagacacctggatttagcatagctataagggatagttactttaaga |
123 |
Q |
| |
|
||||||||| |||||||||| || || ||| || |||||||||||||||||||||| || |||||| |||||||| || |||||| ||||||||||||| |
|
|
| T |
38084418 |
tcaaatactgttttaggaaagccaataattatagcagagtttggaaagtcttcaaagtcagctggatatagcatagataaaagggacagttactttaaga |
38084319 |
T |
|
| Q |
124 |
aagtatacaatgccatatctaaaagtgctatgagtggaggctcatgtgcaggtggaattttctggctacttctgtctcaaggaatggatacctatggaga |
223 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||| | ||||| |
|
|
| T |
38084318 |
aagtatacaatgccatatctacaagtgctatcagtggaggctcatgtgcaggtggaattttttggcaactcctgtctcaagggatggataacatgggaga |
38084219 |
T |
|
| Q |
224 |
tggctatcaagtcattttt |
242 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
38084218 |
tggctatgaagtcattttt |
38084200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 38089449 - 38089239
Alignment:
| Q |
25 |
caaatactattttaggaaaacccattattgtacaagagtttggaaagtcttcaaagacacctggatttagcatagctataagggatagttactttaagaa |
124 |
Q |
| |
|
||||||||||||||| ||| || || ||||||||||||||||||| || ||||| | |||||||| | ||| || | |||||| ||||||||||| || |
|
|
| T |
38089449 |
caaatactattttagtaaagccaatcattgtacaagagtttggaacgttttcaaggttacctggatatcgcacagatcaaagggacagttactttaacaa |
38089350 |
T |
|
| Q |
125 |
agtatacaatgccatatctaaaagtgctatgagtggaggctcatgtgcaggtggaattttctggctacttctgtctcaaggaatggatacctatggagat |
224 |
Q |
| |
|
| | || | ||||||||||| ||||||||| |||||||||||||| || |||||||||||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
38089349 |
aatttatagtgccatatctacaagtgctatcagtggaggctcatgcgcgggtggaattttctggcaactcatgtctcaaggaatggatggctatggagat |
38089250 |
T |
|
| Q |
225 |
ggctatcaagt |
235 |
Q |
| |
|
|| ||| |||| |
|
|
| T |
38089249 |
ggttatgaagt |
38089239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 37070490 - 37070588
Alignment:
| Q |
137 |
catatctaaaagtgctatgagtggaggctcatgtgcaggtggaattttctggctacttctgtctcaaggaatggatacctatggagatggctatcaagt |
235 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||||| ||||||| || |||| ||||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
37070490 |
catatctacaagtgatattagtggaggctcatgtgcaggtgagattttctagcaacttatgtctcaaggaatggatggctatggagatggttatgaagt |
37070588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University