View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4989_low_28 (Length: 233)
Name: NF4989_low_28
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 11192817 - 11192614
Alignment:
| Q |
13 |
ataatactcactcacgcctattcttttcaaactcagagatagatacaaatttaaggtttcaaagacatggcatcatcgtcgtcgaagaagatcatcctta |
112 |
Q |
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| T |
11192817 |
ataatactcactcacgcctattcttttcaaactcagagatagatacaaatttaaggtttcaaagacatggcatcattgtcgtcgaagaagatcatcctta |
11192718 |
T |
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| Q |
113 |
agagttatgagggcgagacctttgaaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactgg |
212 |
Q |
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| T |
11192717 |
agagttatgagggcgagacctttgaaatagaagaggcggtggcaatgcaatcccagacgatcaagcttttgatagacgatgactgtgccaacgacactgg |
11192618 |
T |
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| Q |
213 |
aatc |
216 |
Q |
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|||| |
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| T |
11192617 |
aatc |
11192614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 11190233 - 11190036
Alignment:
| Q |
21 |
cactcacgcctattcttttcaaactcagagatagatacaaa--tttaaggtttcaaagacatggcatcatcgtcgtcgaagaagatcatccttaagagtt |
118 |
Q |
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| T |
11190233 |
cactcacgcctattcttttcaaactcagagaaagacacaaaaatttagggtttctaattcatggcatcatcatcaatgaagaagatcatcctgaagagtt |
11190134 |
T |
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| Q |
119 |
atgagggcgagacctttgaaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaatc |
216 |
Q |
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| T |
11190133 |
ctgaaggcgagacctttgaaatcgaagaggcggtggcagttcaatcgcagacgatcaagcatttgatcggcgaccagtgtgccaatgacactgaaatc |
11190036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 11179491 - 11179374
Alignment:
| Q |
99 |
gaagatcatccttaagagttatgagggcgagacctttgaaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacgagtgt |
198 |
Q |
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|||||||||| | ||||||| ||| |||||||||||| |||| ||| ||| ||||||| ||||||||||||||||||||| |||||| ||||| |||||| |
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| T |
11179491 |
gaagatcatcttgaagagttctgatggcgagacctttaaaatcgaaaaggcggtggcaatgcaatcccagacgatcaagcatttgatcgacgaggagtgt |
11179392 |
T |
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| Q |
199 |
gccaacgacactggaatc |
216 |
Q |
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| T |
11179391 |
gccaacgacactggaatc |
11179374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 11197957 - 11197875
Alignment:
| Q |
61 |
atttaaggtttcaaagacatggcatcatcgtcgtcg---aagaagatcatccttaagagttatgagggcgagacctttgaaat |
140 |
Q |
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| T |
11197957 |
atttacggtttcaaagtcatggcatcatcatcgtcctcaaagaagatcatcctgaagagttatgagggcgagacctttgaaat |
11197875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 11240934 - 11240855
Alignment:
| Q |
137 |
aaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaatc |
216 |
Q |
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|||| |||||||||||||| || ||||||| || ||||||| |||||| || |||||||||| |||||||| ||||||| |
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| T |
11240934 |
aaattgaagaggtggtggctttggaatcccatactatcaagcatttgattgatgacgagtgtgtcaacgacattggaatc |
11240855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 11179571 - 11179541
Alignment:
| Q |
21 |
cactcacgcctattcttttcaaactcagaga |
51 |
Q |
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| T |
11179571 |
cactcacgcctattcttttcaaactcagaga |
11179541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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