View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4989_low_3 (Length: 594)
Name: NF4989_low_3
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 186 - 575
Target Start/End: Complemental strand, 29690477 - 29690088
Alignment:
| Q |
186 |
aaaaaagaaacaatttaacatgagaaaagttgagttgtttaattacttagggttggttcattattattgtaaagttgagttggagaagtaagatagtaaa |
285 |
Q |
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| T |
29690477 |
aaaaaagaaacaatttaacatgagaaaagttgagttgtttaattacttagggttggttcattattattgtaaagttgagttggagaagtaagatagtaaa |
29690378 |
T |
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| Q |
286 |
tcaagatttttgtcnnnnnnnngatagtaaatcaagattctcattttctaattgtttaattacgtttgttttcatcacttaagattgtgcaatccacaat |
385 |
Q |
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| T |
29690377 |
tcaagatttttgtcaaaaaaaagatagtaaatcaagattctcattttctaattgtttaattacgtttgttttcatcacttaagattgtgcaatccacaat |
29690278 |
T |
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| Q |
386 |
gcctcgaacaaacatttttctactcttctttaggaaccggtttgtacaaatgcatgaacacgatcaagtatcaaacctcccttgctttaatgaagcttgt |
485 |
Q |
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| T |
29690277 |
gcctcgaacaaacatttttctactcttctttaggaaccggtttgtacaaatgcatgaacaagatcaagcatcaaacctcccttgctttaatgaagcttgt |
29690178 |
T |
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| Q |
486 |
atccttttcatgtgcttgtagggctataaacaagcatggttggtaaaataaattaaagtagtctaatctaagtaggtgtttgacaaatat |
575 |
Q |
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| T |
29690177 |
atccttttcatgtgcttgtagggctataaacaagcatggttggtaaaataaattaaagtagtctaatctaagtaggtgtttgacaaatat |
29690088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 29690651 - 29690514
Alignment:
| Q |
15 |
tataaacggatgatgtatccaaacacttcaatttatcaatatgcagaagctcccgatttggtcccttagattcttacgcaatcacatggtgtcaatgagc |
114 |
Q |
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| T |
29690651 |
tataaacggatgatgtatccaaacacttcaatttatcaatatgcagaagctcccaatttggtcccttagattcttacgcaatcacatggtgtcaatgagc |
29690552 |
T |
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| Q |
115 |
catgaatgattaatagagtcatttctcacgttaaattg |
152 |
Q |
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| T |
29690551 |
catgaatgattaatagagtcatttctcacgttaaattg |
29690514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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