View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4989_low_4 (Length: 569)
Name: NF4989_low_4
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_low_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 265 - 569
Target Start/End: Original strand, 29116037 - 29116352
Alignment:
| Q |
265 |
ttataggaagatcaaggcattataaggttattaactacttgacagataattcctaaaagaaaggaaatgtttcggttgcaatttcacacgcctcacttct |
364 |
Q |
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| T |
29116037 |
ttataggaagatcaaggcattataaggttattaactacttgacagatatttcctaaaagaaaggaaatgtttcggttgcaatttcacacgcctcact--- |
29116133 |
T |
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| Q |
365 |
aagcatgatcaaaatttgaattagtcaaatagcttactcacccctattatttatttctacaccatgtggtttaattaaataattaaatatcgaataaatc |
464 |
Q |
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| T |
29116134 |
aagcatgatcaaaatttgaattagtcaaatagcttactcacccctattatttatttctacaccatgtggtttaattaaataattaaatattgaataaatc |
29116233 |
T |
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| Q |
465 |
tttatataccgtgtataaaatattagg--------------ctgtaacaaatgtgattcggaacatggaatgtatgtcattaaagacaaaagcatagggg |
550 |
Q |
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| T |
29116234 |
tttatacaacgtgtataaaatattaggatgttacaagccctttgtaacaaatgtgattctgaacatggaatgtatgtcattaaagacaaaagcaaagggg |
29116333 |
T |
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| Q |
551 |
taatcattctatatcttta |
569 |
Q |
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| T |
29116334 |
taatcattctatatcttta |
29116352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 29115809 - 29116041
Alignment:
| Q |
5 |
gagagagatgaacgcgattctaattgcttctataattaacgagaaaagtgagagaattttaaactggagatttaggcatcatgaagtgaaaccaagtgta |
104 |
Q |
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| T |
29115809 |
gagagagatgaacgcgattctaattgcttctataattaacgagaaaagtgagagaattttaaactggagatttaggcagcatgaagtgaaaccaagtgta |
29115908 |
T |
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| Q |
105 |
taattaagttacggtttattaaactagaaatgatacacat---ggatggttttgtagaattaaaattgagtaacaagttatggtttattaaaatagaaca |
201 |
Q |
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| T |
29115909 |
tga--aagttacggtttattaaactagaaat-ataaacatgcaggatggttttgtagaattaaaattgagtaacaagttatggtttattaaaatagaaca |
29116005 |
T |
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| Q |
202 |
ggatttggaaccaaatgatctcatctaaattttata |
237 |
Q |
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| T |
29116006 |
ggatttggaaccaaatgatctcatctaagttttata |
29116041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 13167675 - 13167588
Alignment:
| Q |
130 |
agaaatgatacacatggatggttttgtagaattaaaattgagtaacaagtta-tggtttattaaaatagaacaggatttggaaccaaa |
216 |
Q |
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| T |
13167675 |
agaaatgatagatatggatagttttgtagaactggaatagagtagcaagttactcgtttattaaaatagaataggatggggaaccaaa |
13167588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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