View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4989_low_5 (Length: 566)
Name: NF4989_low_5
Description: NF4989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4989_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 41022801 - 41023186
Alignment:
| Q |
1 |
caagtggctcatggcacatacaagtattggagaactatagcttagacccagaaataaaagtgtctgagtcatagttattctgcaaaatccatcaatcata |
100 |
Q |
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| T |
41022801 |
caagtggctcatggcacatacaagtattggagaactatagcttagacccagaaataaaagtgtctgagtcatagttattctgcaaaatccatcaatcaca |
41022900 |
T |
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| Q |
101 |
acaaaaatgttacataaattaggctttaaattttaattcaaatatattcaaatggtcttagtaaattagatttaaaatattttggtgcata-caatatta |
199 |
Q |
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| T |
41022901 |
acaaaaatgttacataaattaggctttaaattttaattcaaatatattcgaagggtcttagtaatttagatttaaaatattttggtacataacaatatta |
41023000 |
T |
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| Q |
200 |
tgacacctttattatattgagtcagagaagaatatttaccctgtaaaccccagaaacaagaatctcataaacaaagagaaagtaaaaagtggcttctcct |
299 |
Q |
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| T |
41023001 |
tgacacctttattatattgagtcagagaagaatatttaccctgtaaaccccagaaacaagaatctcataaacaaagagaaagtaaaaagtggcttctcct |
41023100 |
T |
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| Q |
300 |
ttctgtgtaaaagaagattaggaataaaattaatcatccatgcaaacaacttcatgcatgtagctagcaacataaacacacacaca |
385 |
Q |
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| T |
41023101 |
ttctgtgtaaaagaagattaggaataaaattaatcatccatgcaaacaacttcatgcatgtagctagcaacataaacacacacaca |
41023186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 414 - 544
Target Start/End: Original strand, 41023186 - 41023316
Alignment:
| Q |
414 |
acctgttttggtggtttaataaaaaagaagtaggaaacaaaattatagtggccaaagcattggtaaaaacaataaacacaaatggactcattccatttgt |
513 |
Q |
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| T |
41023186 |
accttttttgggggtttaataaaaaagaagtaggaaacaaaattatagtggccaaagcattggtataaacaataaacacaaatggactcattccatttgt |
41023285 |
T |
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| Q |
514 |
tattacagtttttgctaaaatagttagtcct |
544 |
Q |
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| T |
41023286 |
tattacagtttttgctaaaatagttagtcct |
41023316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 31523789 - 31523817
Alignment:
| Q |
1 |
caagtggctcatggcacatacaagtattg |
29 |
Q |
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| T |
31523789 |
caagtggctcatggcacatacaagtattg |
31523817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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