View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4990-Insertion-1 (Length: 1106)

Name: NF4990-Insertion-1
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4990-Insertion-1
NF4990-Insertion-1
[»] chr4 (8 HSPs)
chr4 (159-1083)||(44007739-44008666)
chr4 (52-165)||(44008727-44008840)
chr4 (819-889)||(30024631-30024702)
chr4 (827-889)||(4071822-4071884)
chr4 (819-881)||(37733930-37733993)
chr4 (382-449)||(41688537-41688604)
chr4 (819-881)||(4191670-4191734)
chr4 (833-889)||(21952906-21952963)
[»] chr6 (9 HSPs)
chr6 (826-889)||(29274297-29274361)
chr6 (819-889)||(22742297-22742368)
chr6 (832-889)||(281916-281974)
chr6 (829-888)||(27713448-27713508)
chr6 (826-888)||(9668054-9668117)
chr6 (819-889)||(24836267-24836338)
chr6 (833-889)||(9093624-9093681)
chr6 (836-889)||(20356153-20356205)
chr6 (827-887)||(20671935-20671996)
[»] chr7 (11 HSPs)
chr7 (826-889)||(45813248-45813312)
chr7 (820-887)||(33894555-33894622)
chr7 (826-885)||(35536045-35536105)
chr7 (819-890)||(42656446-42656518)
chr7 (831-885)||(39591539-39591594)
chr7 (819-889)||(49060471-49060542)
chr7 (827-888)||(2012683-2012745)
chr7 (827-888)||(2030648-2030710)
chr7 (832-885)||(5006581-5006635)
chr7 (821-889)||(9527158-9527227)
chr7 (821-881)||(28178902-28178963)
[»] chr5 (7 HSPs)
chr5 (819-886)||(7674579-7674647)
chr5 (819-886)||(9202819-9202887)
chr5 (819-889)||(29588811-29588881)
chr5 (836-889)||(14295454-14295508)
chr5 (819-889)||(18704104-18704174)
chr5 (831-885)||(43215322-43215376)
chr5 (819-887)||(465885-465954)
[»] chr8 (4 HSPs)
chr8 (819-889)||(42597332-42597403)
chr8 (826-887)||(37444485-37444547)
chr8 (821-889)||(12361125-12361194)
chr8 (819-889)||(3537099-3537170)
[»] chr3 (10 HSPs)
chr3 (827-889)||(38462220-38462283)
chr3 (832-890)||(49586983-49587042)
chr3 (832-889)||(1395615-1395673)
chr3 (845-885)||(51197808-51197848)
chr3 (835-889)||(36783402-36783457)
chr3 (819-885)||(35328236-35328302)
chr3 (820-886)||(48597661-48597727)
chr3 (350-443)||(24133636-24133729)
chr3 (815-860)||(31403285-31403330)
chr3 (832-889)||(50952278-50952334)
[»] chr2 (11 HSPs)
chr2 (826-888)||(17952770-17952833)
chr2 (178-237)||(42709398-42709457)
chr2 (827-889)||(29430695-29430757)
chr2 (819-890)||(11393432-11393505)
chr2 (820-888)||(11393724-11393793)
chr2 (819-890)||(11410093-11410166)
chr2 (820-888)||(11410385-11410454)
chr2 (832-888)||(35459854-35459911)
chr2 (826-881)||(32098384-32098440)
chr2 (832-883)||(40837502-40837554)
chr2 (819-888)||(28803575-28803645)
[»] chr1 (8 HSPs)
chr1 (831-883)||(38867907-38867960)
chr1 (818-889)||(45999356-45999428)
chr1 (819-902)||(46499909-46499993)
chr1 (827-889)||(4200168-4200231)
chr1 (819-889)||(37841929-37842000)
chr1 (832-889)||(49517014-49517072)
chr1 (832-889)||(28389141-28389198)
chr1 (825-881)||(50319229-50319286)
[»] scaffold0349 (1 HSPs)
scaffold0349 (829-888)||(18436-18496)
[»] scaffold0024 (1 HSPs)
scaffold0024 (820-889)||(27508-27578)


Alignment Details
Target: chr4 (Bit Score: 708; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 159 - 1083
Target Start/End: Complemental strand, 44008666 - 44007739
Alignment:
Q  159 aaaaagagtccttctggtaacttgtaagaactagtttgaaagtaagttatttaattcagagactaacttgttggtaagtgataaaattcaacaactaatt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44008666 aaaaagagtccttctggtaacttgtaagaactagtttgaaagtaagttatttaattcagagactaacttgttggtaagtgataaaattcaacaactaatt 44008567  T
Q  259 tgacaataatttaggtacaagttaacagatagaccaagttgctcgatggaactcaaagataagggtttttt-cctgttatataattcagagactaatttg 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  44008566 tgacaataatttaggtacaagttaacagatagaccaagttgctcgatggaactcaaagataaggttttttttcctgttatataattcagagactaatttg 44008467  T
Q  358 atagtaaatgatagaattcagcaactaatttgacaataaactagattcaagttaacagaaagaccaagttgctcgacgtaactcaagatcaaggtcnnnn 457  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  44008466 atggtaaatgatagaattcagcaactaatttgacaataaactagattcaagttaacagaaagaccaagttgctcgacgtaactcaagatcaaggtctttt 44008367  T
Q  458 nnnnnncctgttaacaagttacaggggtaaatgctcgaaccctacaatttcatgggatgaattgtcgattcacttgaagaattgatagtagctacaaaat 557  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  44008366 ttt---cctgttaacaagttacaggggtaaatgctcgaaccctacaatttcatgggatgaattgttgattcactcgaagaattgatagtagctacaaaat 44008270  T
Q  558 tagtgtcctgcacatctctagaggaccgacctaataatattgtccatatatttaatcaaataataacaagtctcacaataacaagaatgaaaaacaagtg 657  Q
    |||||||||||||||||||||||||||||||||||||||| | ||   | ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44008269 tagtgtcctgcacatctctagaggaccgacctaataatatcgccc---tctttaatcaaataataacaaatctcacaataacaagaatgaaaaacaagtg 44008173  T
Q  658 tcagtagccaattgacctcatgatgttaatacttcatagcattatacatatacaaatacgaacaacaatgataatgtaaaaacaagcagctatatatctt 757  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44008172 tcagtagccaattgacctcatgatgttaatacttcatagcattatacatatacaaatacaaacaacaatgataatgtaaaaacaagcagctatatatctt 44008073  T
Q  758 aagtcaataaaacaggatcagcgacaataacatcatacatagaatttaacaacttcacatcataagtacttatatataagctattactataccaaaagat 857  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44008072 aagtcaataaaacaggatcagcgacaataacatcatacatagaatttaacaacttcacatcataagtacttatatataagctattactataccaaaagat 44007973  T
Q  858 -aaataaagacaaattgttttcatataagctatcatgacgagcttacaaacatgtcataagtcattttaaaaaactccttcaaacagttctcac-agtac 955  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||    
T  44007972 aaaataaagacaaattgttttcatataagctatcatgacgagcttacaaacatgtcataagtcattttaataaactccttcaaacag-tctcacaagtac 44007874  T
Q  956 taattagattaaatacatcaattccaaacata-cctaagctaa-tagaataact-aaacttaa-tactacaa--cactaaaacat-agttattaaaagta 1048  Q
    ||||||||||||||||||||| |||||||||| |||||||||| ||||  |||| |||||||| ||||||||   |||||||||| || ||||||||       
T  44007873 taattagattaaatacatcaa-tccaaacataccctaagctaattagataaactaaaacttaagtactacaaacaactaaaacataagctattaaaaagt 44007775  T
Q  1049 atcttcagatggaaac-caaacatgggtactgaaag 1083  Q
    ||||||| |  ||||| |||||||||||||||||||    
T  44007774 atcttcaaaatgaaacacaaacatgggtactgaaag 44007739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 44008840 - 44008727
Alignment:
Q  52 atttagtcttaaagaactagcaccacgagcacttggagcaaatcaccaattcgccccctaaaactgtagggatcgagtacttcccccctgaaatttgttg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44008840 atttagtcttaaagaactagcaccacgagcacttggagcaaatcaccaattcgccccctaaaactgtagggatcgagtacttcccccctgaaatttgttg 44008741  T
Q  152 atagagaaaaaaga 165  Q
    ||||||||||||||    
T  44008740 atagagaaaaaaga 44008727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 819 - 889
Target Start/End: Original strand, 30024631 - 30024702
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    ||||||||||||  ||||| |||| ||||| ||||||||||| |||||  ||||||||||||||||||||||    
T  30024631 ataagtacttatgcataagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctat 30024702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 827 - 889
Target Start/End: Original strand, 4071822 - 4071884
Alignment:
Q  827 ttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    |||||||||| ||||| ||||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  4071822 ttatatataa-ctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 4071884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 819 - 881
Target Start/End: Original strand, 37733930 - 37733993
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagata-aataaagacaaattgttttcata 881  Q
    |||||||||||| ||||||||||| ||||| ||| ||||| ||||||| |||||| ||||||||    
T  37733930 ataagtacttatttataagctatttctatagcaagagatacaataaagtcaaattcttttcata 37733993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 382 - 449
Target Start/End: Original strand, 41688537 - 41688604
Alignment:
Q  382 ctaatttgacaataaactagattcaagttaacagaaagaccaagttgctcgacgtaactcaagatcaa 449  Q
    ||||||||||| |||| ||||| |||||||| ||||  ||||||||||||||| ||| |||| |||||    
T  41688537 ctaatttgacagtaaattagatacaagttaatagaagaaccaagttgctcgacataattcaaaatcaa 41688604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 819 - 881
Target Start/End: Original strand, 4191670 - 4191734
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat--aaataaagacaaattgttttcata 881  Q
    |||||| ||||| ||||||||||| ||||| ||||||||  |||||||| |||| ||||||||||    
T  4191670 ataagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaactgttttcata 4191734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 833 - 889
Target Start/End: Original strand, 21952906 - 21952963
Alignment:
Q  833 ataagctattactataccaa-aagataaataaagacaaattgttttcatataagctat 889  Q
    |||||||||| ||||| ||| |||  |||||||| |||||||||||||||||||||||    
T  21952906 ataagctatttctataacaacaagtaaaataaagtcaaattgttttcatataagctat 21952963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 826 - 889
Target Start/End: Complemental strand, 29274361 - 29274297
Alignment:
Q  826 cttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  29274361 cttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctat 29274297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 819 - 889
Target Start/End: Original strand, 22742297 - 22742368
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    |||||| ||||| |||||||||||  |||| |||| |||||| ||||| |||||||||||||||||||||||    
T  22742297 ataagttcttatctataagctatttgtataacaaaggataaaataaagtcaaattgttttcatataagctat 22742368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 832 - 889
Target Start/End: Complemental strand, 281974 - 281916
Alignment:
Q  832 tataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    ||||||||||| ||||| ||||||||||| ||||| ||| |||||||||||||||||||    
T  281974 tataagctattcctataacaaaagataaaataaagtcaacttgttttcatataagctat 281916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 829 - 888
Target Start/End: Original strand, 27713448 - 27713508
Alignment:
Q  829 atatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagcta 888  Q
    ||||||||||||||  |||| ||||||||||| ||||| |||||| |||||||||||||||    
T  27713448 atatataagctattgatatatcaaaagataaaataaagtcaaattcttttcatataagcta 27713508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 826 - 888
Target Start/End: Complemental strand, 9668117 - 9668054
Alignment:
Q  826 cttatatataagctattactataccaaaagataa-ataaagacaaattgttttcatataagcta 888  Q
    |||||||||||||||||  |||| |||||||||| ||| || | ||||||||||||||||||||    
T  9668117 cttatatataagctatttgtataacaaaagataacatagagtcgaattgttttcatataagcta 9668054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 819 - 889
Target Start/End: Complemental strand, 24836338 - 24836267
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagctat 889  Q
    ||||||| |||| |||||| |||| ||||| |||||||| |||||||| |||||||||||| ||||| ||||    
T  24836338 ataagtatttatgtataagttatttctataacaaaagataaaataaagtcaaattgttttcgtataaactat 24836267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 833 - 889
Target Start/End: Complemental strand, 9093681 - 9093624
Alignment:
Q  833 ataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    |||||||||| ||||| ||||||||||| |||||  ||||||||||| ||||||||||    
T  9093681 ataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctat 9093624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 836 - 889
Target Start/End: Complemental strand, 20356205 - 20356153
Alignment:
Q  836 agctattactataccaaaagataaataaagacaaattgttttcatataagctat 889  Q
    |||||||  |||| ||||||| |||||||||| |||||||||||||||||||||    
T  20356205 agctatttttataacaaaaga-aaataaagacgaattgttttcatataagctat 20356153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 827 - 887
Target Start/End: Complemental strand, 20671996 - 20671935
Alignment:
Q  827 ttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagct 887  Q
    |||| ||||||||||| ||| | ||||||||||| ||||| |||||||||||| ||||||||    
T  20671996 ttatgtataagctatttctagatcaaaagataaaataaagtcaaattgttttcgtataagct 20671935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 826 - 889
Target Start/End: Complemental strand, 45813312 - 45813248
Alignment:
Q  826 cttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagctat 889  Q
    ||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||||||| ||||    
T  45813312 cttatttataagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctat 45813248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 820 - 887
Target Start/End: Original strand, 33894555 - 33894622
Alignment:
Q  820 taagtacttatatataagctattactataccaaaagataaataaagacaaattgttttcatataagct 887  Q
    ||||| ||||| ||||||||||| ||||| |||||||||||  ||| |||| ||||||||||||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaataagtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 826 - 885
Target Start/End: Original strand, 35536045 - 35536105
Alignment:
Q  826 cttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataag 885  Q
    ||||| ||||||||||| ||||| || |||||||| ||||| |||||||||||||||||||    
T  35536045 cttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 819 - 890
Target Start/End: Original strand, 42656446 - 42656518
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagctatc 890  Q
    ||||| |||||||||||||||||| ||||| |||||||| |||||||| |||||  ||||  |||||||||||    
T  42656446 ataagcacttatatataagctatttctataacaaaagataaaataaagtcaaatcatttttgtataagctatc 42656518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 831 - 885
Target Start/End: Complemental strand, 39591594 - 39591539
Alignment:
Q  831 atataagctattactataccaaaagataaa-taaagacaaattgttttcatataag 885  Q
    ||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||||||    
T  39591594 atataagttatttctataacaaaagataaaataaagtcaaattgttttcatataag 39591539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 819 - 889
Target Start/End: Original strand, 49060471 - 49060542
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagctat 889  Q
    ||||||| |||| ||||||||||| ||||| ||||| || |||||||| |||||| |||| |||||||||||    
T  49060471 ataagtatttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctat 49060542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 827 - 888
Target Start/End: Complemental strand, 2012745 - 2012683
Alignment:
Q  827 ttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagcta 888  Q
    |||| ||||||||||| |||| |||||| || |||||| | ||||||||||||||||||||||    
T  2012745 ttatgtataagctatttctatgccaaaatattaaataatgtcaaattgttttcatataagcta 2012683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 827 - 888
Target Start/End: Original strand, 2030648 - 2030710
Alignment:
Q  827 ttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagcta 888  Q
    |||| ||||||||||| |||| |||||| || |||||| | ||||||||||||||||||||||    
T  2030648 ttatgtataagctatttctatgccaaaatattaaataatgtcaaattgttttcatataagcta 2030710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 832 - 885
Target Start/End: Complemental strand, 5006635 - 5006581
Alignment:
Q  832 tataagctattactataccaaaagat-aaataaagacaaattgttttcatataag 885  Q
    ||||||||||| ||||| |||||||| |||||||| |||| ||||||||||||||    
T  5006635 tataagctattcctataacaaaagataaaataaagtcaaactgttttcatataag 5006581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 889
Target Start/End: Complemental strand, 9527227 - 9527158
Alignment:
Q  821 aagtacttatatataagctattactataccaaaagata-aataaagacaaattgttttcatataagctat 889  Q
    |||| |||||||||| |||||  ||||| ||||||||| ||||||| |||| ||||||||||||| ||||    
T  9527227 aagtgcttatatatacgctatatctataacaaaagatataataaagtcaaactgttttcatataaactat 9527158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 881
Target Start/End: Original strand, 28178902 - 28178963
Alignment:
Q  821 aagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcata 881  Q
    ||||||| || ||||||||||| ||||| |||||||| |||||||| || ||||||||||||    
T  28178902 aagtactcatgtataagctatttctataacaaaagataaaataaagtcatattgttttcata 28178963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 819 - 886
Target Start/End: Original strand, 7674579 - 7674647
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagc 886  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||||   ||||||||||| |||||||    
T  7674579 ataagcacttatatataagctatttctataccaaaagataaaataaatttaaattgttttcttataagc 7674647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 819 - 886
Target Start/End: Complemental strand, 9202887 - 9202819
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagc 886  Q
    |||||| ||||||||||||||||| || || |||||||| ||||||||  |||||||||||||||||||    
T  9202887 ataagtgcttatatataagctatttctgtagcaaaagataaaataaagttaaattgttttcatataagc 9202819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 819 - 889
Target Start/End: Original strand, 29588811 - 29588881
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagctat 889  Q
    |||||| ||||| ||||||||||| ||||| ||||| || |||||| || ||||||||||||||||||||||    
T  29588811 ataagtgcttatgtataagctatttctataacaaaatataaaataatga-aaattgttttcatataagctat 29588881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 836 - 889
Target Start/End: Original strand, 14295454 - 14295508
Alignment:
Q  836 agctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    ||||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||||    
T  14295454 agctatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 14295508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 819 - 889
Target Start/End: Complemental strand, 18704174 - 18704104
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagataaataaagacaaattgttttcatataagctat 889  Q
    |||||| ||||| |||||| |||| ||||| |||||||||||||||| |||  | |||| |||||||||||    
T  18704174 ataagttcttatgtataagttatttctataacaaaagataaataaagtcaagctatttttatataagctat 18704104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 831 - 885
Target Start/End: Original strand, 43215322 - 43215376
Alignment:
Q  831 atataagctattactataccaaaagataaataaagacaaattgttttcatataag 885  Q
    |||||||||||| ||||| ||||||||||||||||  |||||| ||| |||||||    
T  43215322 atataagctatttctataacaaaagataaataaagttaaattgcttttatataag 43215376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 819 - 887
Target Start/End: Original strand, 465885 - 465954
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagct 887  Q
    ||||| |||||||||||||||||| ||||  |||||||| ||||||||  ||||||||||  ||||||||    
T  465885 ataagcacttatatataagctatttctatgacaaaagataaaataaagttaaattgtttttgtataagct 465954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 819 - 889
Target Start/End: Original strand, 42597332 - 42597403
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagctat 889  Q
    |||||||||||| ||||||||||| ||||| |||||||| ||||||||  |||||||||||||  |||||||    
T  42597332 ataagtacttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctat 42597403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 826 - 887
Target Start/End: Complemental strand, 37444547 - 37444485
Alignment:
Q  826 cttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagct 887  Q
    ||||| ||||||||||||||||| ||||||||||| |||||  ||||||||||| ||||||||    
T  37444547 cttatgtataagctattactataacaaaagataaagtaaagttaaattgttttcgtataagct 37444485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 821 - 889
Target Start/End: Original strand, 12361125 - 12361194
Alignment:
Q  821 aagtacttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    ||||||||||||||||| |||| |||||   ||||||||| | ||| |||||||||||||||||||||||    
T  12361125 aagtacttatatataagttatttctataaataaagataaaatgaagtcaaattgttttcatataagctat 12361194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 819 - 889
Target Start/End: Complemental strand, 3537170 - 3537099
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    ||||| |||| | ||||||| ||| ||||| ||||||||||| ||||| |||||||||||| ||||||||||    
T  3537170 ataagcacttttgtataagcaatttctatagcaaaagataaaataaagtcaaattgttttcgtataagctat 3537099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 827 - 889
Target Start/End: Original strand, 38462220 - 38462283
Alignment:
Q  827 ttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagctat 889  Q
    |||| ||||||||||| |||||||||||||| |||||||| |||| |||||||||||| |||||    
T  38462220 ttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctat 38462283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 832 - 890
Target Start/End: Complemental strand, 49587042 - 49586983
Alignment:
Q  832 tataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctatc 890  Q
    ||||||||||| ||||| ||||||||||| ||||| |||| |||||||||||||||||||    
T  49587042 tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctatc 49586983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 832 - 889
Target Start/End: Original strand, 1395615 - 1395673
Alignment:
Q  832 tataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    ||||||||||| ||||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  1395615 tataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 845 - 885
Target Start/End: Complemental strand, 51197848 - 51197808
Alignment:
Q  845 tataccaaaagataaataaagacaaattgttttcatataag 885  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  51197848 tataacaaaagatagataaagacaaattgttttcatataag 51197808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 835 - 889
Target Start/End: Complemental strand, 36783457 - 36783402
Alignment:
Q  835 aagctattactataccaaaagat-aaataaagacaaattgttttcatataagctat 889  Q
    |||||||| |||||||||||||| ||||||||  ||||||||||||||||| ||||    
T  36783457 aagctatttctataccaaaagataaaataaagtaaaattgttttcatataaactat 36783402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 819 - 885
Target Start/End: Complemental strand, 35328302 - 35328236
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagataaataaagacaaattgttttcatataag 885  Q
    ||||| |||||| || || ||||||||||| |||| |||||||||||  ||||||||||| ||||||    
T  35328302 ataagcacttatgtacaacctattactatagcaaaggataaataaagttaaattgttttcgtataag 35328236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 820 - 886
Target Start/End: Complemental strand, 48597727 - 48597661
Alignment:
Q  820 taagtacttatatataagctattactataccaaaagataaataaagacaaattgttttcatataagc 886  Q
    ||||| ||||| | ||| ||||| ||||| |||||||||||| ||| ||||| ||||||||||||||    
T  48597727 taagtgcttatgtttaaactatttctataacaaaagataaattaagtcaaatggttttcatataagc 48597661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 350 - 443
Target Start/End: Original strand, 24133636 - 24133729
Alignment:
Q  350 ctaatttgatagtaaatgatagaattcagcaactaatttgacaataaactagattcaagttaacagaaagaccaagttgctcgacgtaactcaa 443  Q
    |||||||| || ||| ||||| | |||||  ||| ||||||||  ||| ||||| |||||||| |||| |||||| ||||||||||||| ||||    
T  24133636 ctaatttgctattaagtgatatacttcagggactgatttgacagaaaattagatacaagttaatagaaggaccaatttgctcgacgtaattcaa 24133729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 815 - 860
Target Start/End: Original strand, 31403285 - 31403330
Alignment:
Q  815 catcataagtacttatatataagctattactataccaaaagataaa 860  Q
    ||||||||| |||||||||||||||||| | ||| |||||||||||    
T  31403285 catcataagcacttatatataagctatttccatatcaaaagataaa 31403330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 832 - 889
Target Start/End: Original strand, 50952278 - 50952334
Alignment:
Q  832 tataagctattactataccaaaagataaataaagacaaattgttttcatataagctat 889  Q
    ||||||||||| ||||| |||| |||||||||||   |||||||||||||||||||||    
T  50952278 tataagctatttctataacaaaggataaataaag-ttaattgttttcatataagctat 50952334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 826 - 888
Target Start/End: Complemental strand, 17952833 - 17952770
Alignment:
Q  826 cttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagcta 888  Q
    ||||||||||||||||| ||||| |||||||| |||||||| |||| | |||||||||||||||    
T  17952833 cttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 42709398 - 42709457
Alignment:
Q  178 acttgtaagaactagtttgaaagtaagttatttaattcagagactaacttgttggtaagt 237  Q
    ||||||||| |||||||||| ||||||| || ||||||||||||||| ||| ||||||||    
T  42709398 acttgtaaggactagtttgacagtaagtgatataattcagagactaatttgatggtaagt 42709457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 827 - 889
Target Start/End: Original strand, 29430695 - 29430757
Alignment:
Q  827 ttatatataagctattactataccaaaagataaataaagacaaattgttttcatataagctat 889  Q
    |||| ||||||||||| ||||| |||||| ||||||||| |||| ||||||| ||||||||||    
T  29430695 ttatgtataagctatttctataacaaaagttaaataaagtcaaactgttttcttataagctat 29430757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 819 - 890
Target Start/End: Complemental strand, 11393505 - 11393432
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagata-aataaagacaaatt-gttttcatataagctatc 890  Q
    |||||| ||||| ||||||||||| ||||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  11393505 ataagtgcttatctataagctatttctatatcaaaagatataataaattcaaattcgttttcatataagctatc 11393432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 820 - 888
Target Start/End: Complemental strand, 11393793 - 11393724
Alignment:
Q  820 taagtacttatatataagctattactataccaaaagata-aataaagacaaattgttttcatataagcta 888  Q
    ||||| ||||| ||||||||||| ||||||||||||||| |||||||  |||| || |||||||||||||    
T  11393793 taagtgcttatgtataagctatttctataccaaaagatacaataaagctaaatcgtcttcatataagcta 11393724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 819 - 890
Target Start/End: Complemental strand, 11410166 - 11410093
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagata-aataaagacaaatt-gttttcatataagctatc 890  Q
    |||||| ||||| ||||||||||| ||||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  11410166 ataagtgcttatctataagctatttctatatcaaaagatataataaattcaaattcgttttcatataagctatc 11410093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 820 - 888
Target Start/End: Complemental strand, 11410454 - 11410385
Alignment:
Q  820 taagtacttatatataagctattactataccaaaagata-aataaagacaaattgttttcatataagcta 888  Q
    ||||| ||||| ||||||||||| ||||||||||||||| |||||||  |||| || |||||||||||||    
T  11410454 taagtgcttatgtataagctatttctataccaaaagatacaataaagctaaatcgtcttcatataagcta 11410385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 832 - 888
Target Start/End: Original strand, 35459854 - 35459911
Alignment:
Q  832 tataagctattactataccaaaagataaa-taaagacaaattgttttcatataagcta 888  Q
    |||||||||||  |||||||||||||||| ||||| |||||||||||| |||||||||    
T  35459854 tataagctatttgtataccaaaagataaaataaagtcaaattgttttcgtataagcta 35459911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 826 - 881
Target Start/End: Complemental strand, 32098440 - 32098384
Alignment:
Q  826 cttatatataagctattactataccaaaagat-aaataaagacaaattgttttcata 881  Q
    ||||||||||||||||| ||||| |||||||| |||||||| |||| ||||||||||    
T  32098440 cttatatataagctatttctataacaaaagataaaataaagtcaaagtgttttcata 32098384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 832 - 883
Target Start/End: Complemental strand, 40837554 - 40837502
Alignment:
Q  832 tataagctattactataccaaaagataaa-taaagacaaattgttttcatata 883  Q
    ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||    
T  40837554 tataagctatttctataacaaaagataaattaaagtcaaattgttttcatata 40837502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 819 - 888
Target Start/End: Complemental strand, 28803645 - 28803575
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagcta 888  Q
    |||||| |||||||||||| |||| | ||| |||||||| |||||||| |||| || ||||||||||||||    
T  28803645 ataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagcta 28803575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 831 - 883
Target Start/End: Complemental strand, 38867960 - 38867907
Alignment:
Q  831 atataagctattactataccaaaaga-taaataaagacaaattgttttcatata 883  Q
    |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||    
T  38867960 atataagctatttctataccaaaagattaaataaagtcaaaatgttttcatata 38867907  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 818 - 889
Target Start/End: Complemental strand, 45999428 - 45999356
Alignment:
Q  818 cataagtacttatatataagctattactataccaaaagataa-ataaagacaaattgttttcatataagctat 889  Q
    ||||||| || || ||||||||||| ||||| |||||||||| |||||| |||| || |||||||||||||||    
T  45999428 cataagtgctcatgtataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctat 45999356  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 819 - 902
Target Start/End: Complemental strand, 46499993 - 46499909
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagctatcatgacgagctta 902  Q
    |||||| ||||| ||||||||||| |||||  ||||||| |||||||| ||||||||||| || |||||| |||||  |||||||    
T  46499993 ataagtgcttatctataagctatttctataagaaaagataaaataaagtcaaattgtttttatttaagctttcatggagagctta 46499909  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 827 - 889
Target Start/End: Original strand, 4200168 - 4200231
Alignment:
Q  827 ttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    ||||||||||| ||||  |||| ||||||||||| ||||| ||| |||||||||||||||||||    
T  4200168 ttatatataagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctat 4200231  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 819 - 889
Target Start/End: Original strand, 37841929 - 37842000
Alignment:
Q  819 ataagtacttatatataagctattactataccaaaagat-aaataaagacaaattgttttcatataagctat 889  Q
    ||||||||| || ||||||||||| ||||| |||| ||| ||||||||  ||||||||||| ||||||||||    
T  37841929 ataagtactcatgtataagctattcctataacaaatgataaaataaagttaaattgttttcgtataagctat 37842000  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 832 - 889
Target Start/End: Original strand, 49517014 - 49517072
Alignment:
Q  832 tataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    |||||| |||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||    
T  49517014 tataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctat 49517072  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 832 - 889
Target Start/End: Complemental strand, 28389198 - 28389141
Alignment:
Q  832 tataagctattactataccaaaagataaataaagacaaattgttttcatataagctat 889  Q
    |||||||||||   ||| |||||||||||||||| |||||||||||| ||||| ||||    
T  28389198 tataagctattttgataacaaaagataaataaagtcaaattgttttcctataaactat 28389141  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 825 - 881
Target Start/End: Original strand, 50319229 - 50319286
Alignment:
Q  825 acttatatataagctattactataccaaaagat-aaataaagacaaattgttttcata 881  Q
    |||||| ||||||||||| ||||| |||||||| |||||||| ||| |||||||||||    
T  50319229 acttatgtataagctatttctataacaaaagataaaataaagtcaagttgttttcata 50319286  T

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Target: scaffold0349 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 829 - 888
Target Start/End: Complemental strand, 18496 - 18436
Alignment:
Q  829 atatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagcta 888  Q
    ||||||||||||||  |||| ||||||||||| ||||| |||||| |||||||||||||||    
T  18496 atatataagctattgatatatcaaaagataaaataaagtcaaattcttttcatataagcta 18436  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 820 - 889
Target Start/End: Original strand, 27508 - 27578
Alignment:
Q  820 taagtacttatatataagctattactataccaaaagataaa-taaagacaaattgttttcatataagctat 889  Q
    ||||| ||||| |||||| |||| ||||| || |||||||| ||||| |||||||||||||||||| ||||    
T  27508 taagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactat 27578  T

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